write_mig: Save a GRanges or data frame object to tsv and UCSC-ready bed...
In rmwthorne/rangr: Extended Functions For Manipulating GenomicRanges Objects

Description Usage Arguments Value Examples

View source: R/export_functions.R

Save a GRanges or data frame object to tsv and UCSC-ready bed file for MIG.

1	write_mig(x, path = "", genome = "hg19", ucsc_suffix = ".ucsc.bed")

`x`	A `GenomicRanges` or `data.frame` object.
`path`	Path to write to.
`genome`	A genome build, e.g. hg19
`ucsc_suffix`	The suffix for the ucsc-ready bed file.

writes an object to a specific path.

gr <- GRanges(Rle(c("chr2", "chr2", "chr1", "chr3"), c(1, 3, 2, 4)),
IRanges(1:10, width=10:1, names=head(letters, 10)),
Rle(strand(c("-", "+", "*", "+", "-")), c(1, 2, 2, 3, 2)),
score=1:10, GC=seq(1, 0, length=10))

write_bed(gr, path = "output/file.ucsc.bed", ucsc = TRUE)