API for rnabioco/clustifyR
Classifier for Single-cell RNA-seq Using Cell Clusters

Global functions
RowVar Man page Source code
_PACKAGE Man page
assign_ident Man page Source code
average_clusters Man page Source code
average_clusters_filter Man page Source code
binarize_expr Man page Source code
calc_similarity Man page Source code
calculate_pathway_gsea Man page Source code
call_consensus Man page Source code
call_to_metadata Man page Source code
cbmc_m Man page
cbmc_ref Man page
clustify Man page Source code
clustify.Seurat Man page Source code
clustify.SingleCellExperiment Man page Source code
clustify.default Man page Source code
clustify.seurat Man page Source code
clustify_intra Man page Source code
clustify_lists Man page Source code
clustify_lists.Seurat Man page Source code
clustify_lists.SingleCellExperiment Man page Source code
clustify_lists.default Man page Source code
clustify_lists.seurat Man page Source code
clustify_nudge Man page Source code
clustify_nudge.Seurat Man page Source code
clustify_nudge.default Man page Source code
clustify_nudge.seurat Man page Source code
clustifyr-package Man page
clustifyr_methods Man page
collapse_to_cluster Man page Source code
compare_lists Man page Source code
compute_mean_expr Man page Source code
cor_to_call Man page Source code
cor_to_call_rank Man page Source code
cor_to_call_topn Man page Source code
cosine Man page Source code
downrefs Man page
downsample_matrix Man page Source code
feature_select_PCA Man page Source code
file_marker_parse Man page Source code
find_rank_bias Man page Source code
gene_pct Man page Source code
gene_pct_markerm Man page Source code
get_best_match_matrix Man page Source code
get_best_str Man page Source code
get_common_elements Man page Source code
get_similarity Man page Source code
get_unique_column Man page Source code
get_vargenes Man page Source code
gmt_to_list Man page Source code
insert_meta_object Man page Source code
kl_divergence Man page Source code
make_comb_ref Man page Source code
marker_select Man page Source code
matrixize_markers Man page Source code
not_pretty_palette Man page
object_loc_lookup Man page
object_ref Man page Source code
overcluster Man page Source code
overcluster_test Man page Source code
parse_loc_object Man page Source code
pbmc_markers Man page
pbmc_markers_M3Drop Man page
pbmc_matrix_small Man page
pbmc_meta Man page
pbmc_vargenes Man page
percent_clusters Man page Source code
permute_similarity Man page Source code
plot_best_call Man page Source code
plot_call Man page Source code
plot_cols Man page Source code
plot_cor Man page Source code
plot_cor_heatmap Man page Source code
plot_gene Man page Source code
plot_pathway_gsea Man page Source code
plot_tsne Man page Source code
pos_neg_marker Man page Source code
pos_neg_select Man page Source code
pretty_palette Man page
pretty_palette2 Man page
pretty_palette_ramp_d Man page
ref_feature_select Man page Source code
ref_marker_select Man page Source code
remove_background Man page Source code
reverse_marker_matrix Man page Source code
run_gsea Man page Source code
s_small Man page
s_small3 Man page
seurat_meta Man page Source code
seurat_meta.Seurat Man page Source code
seurat_meta.seurat Man page Source code
seurat_ref Man page Source code
seurat_ref.Seurat Man page Source code
seurat_ref.seurat Man page Source code
vector_similarity Man page Source code
rnabioco/clustifyR documentation built on Nov. 16, 2019, 9:51 p.m.