repeat_data: Human repetitive elements
In rnabioco/valrdata: Genomics datasets for demonstrating the valr package
Description
Usage
Format
Source
Description
A dataset containing annotations for repeat classes in the hg19 human genome, as
annotated by RepeatMasker
Usage
1
Format
A data frame with 5,520,017 rows and 8 variables:
- chrom
chromosome
- start
start position
- end
end position
- name
repeat name
- score
Smith-Waterman alignment score, i.e. swScore
- strand
strand
- repClass
repeat class
- repFamily
repeat family
Source
http://genome.ucsc.edu/cgi-bin/hgTables
rnabioco/valrdata documentation built on May 27, 2019, 9:56 a.m.
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Description Usage Format Source
Description
A dataset containing annotations for repeat classes in the hg19 human genome, as annotated by RepeatMasker
Usage
1 |
Format
A data frame with 5,520,017 rows and 8 variables:
- chrom
chromosome
- start
start position
- end
end position
- name
repeat name
- score
Smith-Waterman alignment score, i.e. swScore
- strand
strand
- repClass
repeat class
- repFamily
repeat family
Source
http://genome.ucsc.edu/cgi-bin/hgTables
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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