API for robAndrewCarter/rnaseqUtils
Utility Functions for RNASeq Data Analysis
| Global functions | |
|---|---|
| create_mst_igraphs_for_samples | Man page Source code |
| examine_dataset | Man page Source code |
| explore_expression | Man page Source code |
| get_annotation_specific_heatmap | Source code |
| get_best_aic_cluster_assignment | Source code |
| get_cellranger_matrices | Man page Source code |
| get_cidr_distance_matrix_from_raw_counts | Man page Source code |
| get_cluster_by_ensembl_mat_of_expr_summaries | Man page Source code |
| get_clustered_scatterplot | Source code |
| get_df_from_named_char_vector | Source code |
| get_df_of_cluster_enrichments_for_each_gene | Man page Source code |
| get_dispersion | Source code |
| get_enriched_genes_in_each_cluster | Source code |
| get_ggplot_heatmap | Source code |
| get_mean_dist_from_matrix | Man page Source code |
| get_mean_exp_by_cluster_with_genename_df | Source code |
| get_normalized_expression_matrix | Man page Source code |
| get_prop_expressed_df | Source code |
| get_prop_mat_from_top_prop_dif | Source code |
| get_random_genes_from_matrix | Man page Source code |
| get_sample_name_to_cluster_id_df | Source code |
| get_sampled_distances | Source code |
| get_treecuts | Source code |
| launch_rnaseq_data_explorer_gadget | Source code |
| plot_igraph_for_gene | Source code |
| plot_ordered_heatmap | Source code |
| rarefy_count_matrix | Source code |
| read_merge_and_return_sample_matrices | Man page Source code |
| remove_ribosomal_proteins_and_mitochondrial_genes_from_matrix | Man page Source code |
| run_interactive_monocle_gadget | Man page Source code |
| split_samples_and_generate_plot | Source code |
| subsample_cell_ranger_data_gadget | Source code |
