create_mst_igraphs_for_samples: Generate Minimum spanning trees from expression matrices
In robAndrewCarter/rnaseqUtils: Utility Functions for RNASeq Data Analysis
Description
Computes the minimum spanning trees from a names list of expression matrices.
Usage
1
2
create_mst_igraphs_for_samples(named_filtered_cell_by_ensembl_mat_list = list(),
n_components, k, dist_measure, p, node_aggregation_function)
Value
create_mst_igraphs_for_samples retuens a list of lists. The outer list corresponds to each sample, whereas the inner list contains the following elements:
1) the mst igraph object, and 2) the node by gene value of n values that were calculated from the node_aggregation_function, 3 a data.frame listing the cluster id of each cell in the sample
robAndrewCarter/rnaseqUtils documentation built on May 22, 2019, 12:55 p.m.
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Description
Computes the minimum spanning trees from a names list of expression matrices.
Usage
1 2 | create_mst_igraphs_for_samples(named_filtered_cell_by_ensembl_mat_list = list(),
n_components, k, dist_measure, p, node_aggregation_function)
|
Value
create_mst_igraphs_for_samples retuens a list of lists. The outer list corresponds to each sample, whereas the inner list contains the following elements: 1) the mst igraph object, and 2) the node by gene value of n values that were calculated from the node_aggregation_function, 3 a data.frame listing the cluster id of each cell in the sample
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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