create_mst_igraphs_for_samples: Generate Minimum spanning trees from expression matrices

Description Usage Value

View source: R/mst.R


Computes the minimum spanning trees from a names list of expression matrices.


  create_mst_igraphs_for_samples(named_filtered_cell_by_ensembl_mat_list = list(),
  n_components, k, dist_measure, p, node_aggregation_function)


create_mst_igraphs_for_samples retuens a list of lists. The outer list corresponds to each sample, whereas the inner list contains the following elements: 1) the mst igraph object, and 2) the node by gene value of n values that were calculated from the node_aggregation_function, 3 a data.frame listing the cluster id of each cell in the sample

robAndrewCarter/rnaseqUtils documentation built on July 29, 2017, 6:51 p.m.