API for robAndrewCarter/rnaseqUtils
Utility Functions for RNASeq Data Analysis

Global functions
create_mst_igraphs_for_samples Man page Source code
examine_dataset Man page Source code
explore_expression Man page Source code
get_annotation_specific_heatmap Source code
get_best_aic_cluster_assignment Source code
get_cellranger_matrices Man page Source code
get_cidr_distance_matrix_from_raw_counts Man page Source code
get_cluster_by_ensembl_mat_of_expr_summaries Man page Source code
get_clustered_scatterplot Source code
get_df_from_named_char_vector Source code
get_df_of_cluster_enrichments_for_each_gene Man page Source code
get_dispersion Source code
get_enriched_genes_in_each_cluster Source code
get_ggplot_heatmap Source code
get_mean_dist_from_matrix Man page Source code
get_mean_exp_by_cluster_with_genename_df Source code
get_normalized_expression_matrix Man page Source code
get_prop_expressed_df Source code
get_prop_mat_from_top_prop_dif Source code
get_random_genes_from_matrix Man page Source code
get_sample_name_to_cluster_id_df Source code
get_sampled_distances Source code
get_treecuts Source code
launch_rnaseq_data_explorer_gadget Source code
plot_igraph_for_gene Source code
plot_ordered_heatmap Source code
rarefy_count_matrix Source code
read_merge_and_return_sample_matrices Man page Source code
remove_ribosomal_proteins_and_mitochondrial_genes_from_matrix Man page Source code
run_interactive_monocle_gadget Man page Source code
split_samples_and_generate_plot Source code
subsample_cell_ranger_data_gadget Source code
robAndrewCarter/rnaseqUtils documentation built on July 29, 2017, 6:51 p.m.