Man pages for robAndrewCarter/rnaseqUtils
Utility Functions for RNASeq Data Analysis
| create_mst_igraphs_for_samples | Generate Minimum spanning trees from expression matrices |
| examine_dataset | Generate several plots and objects for dataset exploration |
| explore_expression | View expression of genes on 2D plots. |
| get_cellranger_matrices | Loads the matrix files from a 10X run |
| get_cidr_distance_matrix_from_raw_counts | Compute distance between samples |
| get_cluster_by_ensembl_mat_of_expr_summaries | calculate cluster summaries |
| get_df_of_cluster_enrichments_for_each_gene | Determine genes enriched in regions of a minimum spanning... |
| get_mean_dist_from_matrix | The function calculates and returns the mean of the... |
| get_normalized_expression_matrix | Process cellranger output |
| get_random_genes_from_matrix | Filter random genes from matrix |
| read_merge_and_return_sample_matrices | Loads and merges the matrix files from a 10X run |
| remove_ribosomal_proteins_and_mitochondrial_genes_from_matrix | Filter MT and Ribsomal protein genes |
| run_interactive_monocle_gadget | Explore a dataset with monocle |
