plot_all_images: Create a set of grid and Muller plots
In robjohnnoble/demonanalysis: Analysis and plotting of demon data

Description Usage Arguments Value Examples

Create a set of grid and Muller plots

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plot_all_images(path, output_filename = NA, file_type = "png",
  output_dir = NA, trim = -1, include_genotype_plots = TRUE,
  cutoff = 0, min_birth_rate = NA, max_birth_rate = NA)

`path`	folder containing the input files
`output_filename`	name of output image file
`file_type`	either "pdf" or "png" (other values default to "pdf")
`output_dir`	folder in which to save the image file; if NA then plots are displayed on screen instead
`trim`	how many rows and columns to remove from grids; if trim < 0 (default) then all rows and columns containing NA are removed
`include_genotype_plots`	whether to include genotype plots
`cutoff`	Numeric cutoff; genotypes that never become more abundant than this value are omitted from Muller plots
`min_birth_rate`	minimum value for birth rate scale (set automatically by default)
`max_birth_rate`	maximum value for birth rate scale (set automatically by default)