sweep_times: Find generations at which sweeps (or at least partial sweeps)...
In robjohnnoble/demonanalysis: Analysis and plotting of demon data
Description
Usage
Arguments
Value
Examples
Description
Find generations at which sweeps (or at least partial sweeps) occurred
Usage
1
sweep_times(phylo, threshold, min_pop = 0)
Arguments
phylo
Dataframe containing phylogeny
threshold
Number between 0 and 1; a genotype must exceed this frequency to be considered dominant
min_pop
Genotypes with populations smaller than this size will be removed before analysis (default 0)
Value
Vector of generations at which (partial) sweeps occurred.
Examples
1
2
3
library(dplyr)
phylo <- filter(driver_phylo, CellsPerSample == -1)
sweep_times(phylo, threshold = 0.1)
robjohnnoble/demonanalysis documentation built on June 30, 2020, 12:47 a.m.
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Description Usage Arguments Value Examples
Description
Find generations at which sweeps (or at least partial sweeps) occurred
Usage
1 | sweep_times(phylo, threshold, min_pop = 0)
|
Arguments
phylo |
Dataframe containing phylogeny |
threshold |
Number between 0 and 1; a genotype must exceed this frequency to be considered dominant |
min_pop |
Genotypes with populations smaller than this size will be removed before analysis (default 0) |
Value
Vector of generations at which (partial) sweeps occurred.
Examples
1 2 3 | library(dplyr)
phylo <- filter(driver_phylo, CellsPerSample == -1)
sweep_times(phylo, threshold = 0.1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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