API for roliveros-ramos/osmose
Object Oriented Simulator of Marine Ecosystems
| Global functions | |
|---|---|
| .add_surveys | Source code |
| .bioguess | Source code |
| .bySpecies | Source code |
| .calculateDeviates | Source code |
| .calculateSelectivity | Source code |
| .checkMonotonicity | Source code |
| .check_species | Source code |
| .compareVersion | Source code |
| .compute_average_matrix | Source code |
| .countOnes | Source code |
| .createCalibrationList | Source code |
| .createParameterList | Source code |
| .errorReadingOutputs | Source code |
| .extract_species_from_list | Source code |
| .generic_pieplot | Source code |
| .generic_staked_barplot | Source code |
| .getBoolean | Source code |
| .getConfig | Source code |
| .getConfig.character | Source code |
| .getConfig.list | Source code |
| .getConfig.osmose.config | Source code |
| .getFileAsVector | Source code |
| .getFishingFrequency | Source code |
| .getKey | Source code |
| .getModelName | Source code |
| .getPar | Source code Source code |
| .getSelectivity | Source code |
| .getSpecies | Source code |
| .getValues | Source code |
| .getVersion | Source code |
| .guessSeparator | Source code |
| .guessType | Source code |
| .initial_length_dist | Source code |
| .listTree | Source code |
| .makeTree | Source code |
| .mapConfig | Source code |
| .mergeMaps | Source code |
| .niceSeq | Source code |
| .normalizeByFreq | Source code |
| .osmose.barplot | Man page Source code |
| .osmose.format_data_stacked | Man page Source code |
| .plot_osmose_dietMatrix | Man page |
| .process_mort_rate_dis | Source code |
| .readCSV | Source code |
| .readConfiguration | Source code |
| .readFilesList | Source code |
| .readInputCsv | Source code |
| .readMortalityCsv | Source code |
| .readOsmoseConfiguration | Source code |
| .readOsmoseCsv | Source code |
| .read_1D | Source code |
| .read_2D | Man page Source code |
| .read_MortStage | Source code |
| .read_osmose_ncdf | Man page Source code |
| .readthis | Source code |
| .removeZeros | Source code |
| .reshapeFishery | Source code |
| .reshapeOsmoseTable | Source code |
| .rewriteOutputs | Source code |
| .rotate | Source code |
| .selectivity.edge | Source code |
| .selectivity.equilibrium | Source code |
| .selectivity.lnorm | Source code |
| .selectivity.log | Source code |
| .selectivity.norm | Source code |
| .selectivity_edge | Source code |
| .selectivity_lnorm | Source code |
| .selectivity_log | Source code |
| .selectivity_norm | Source code |
| .setupInitialization | Source code |
| .simCatch_ini | Source code |
| .simF_ini | Source code |
| .strsplit2v | Source code |
| .summary.generic | Source code |
| .time.conv | Source code |
| .warningReadingOutputs | Source code |
| .writeFishingFile | Source code |
| .writelabel | Source code |
| F_msy | Source code |
| VB | Source code |
| VB_inv | Source code |
| addAttr | Source code |
| cacheManager | Man page Source code |
| cachePath | Source code |
| calculateMLF | Source code |
| calculateMortality | Source code |
| calculateSeasonalPattern | Source code |
| calculateSelectivity | Source code |
| configureCalibration | Man page Source code |
| createOsmoseMaps | Source code |
| existOsmoseParameter | Source code |
| extract_grid_mask | Source code |
| extract_grid_param | Source code |
| find_species_index | Source code |
| flushCache | Source code |
| getAverageMortality | Source code |
| getFishingBaseRate | Source code |
| getFishingBaseRate.byDt | Source code |
| getFishingBaseRate.byRegime | Source code |
| getFishingBaseRate.byYear | Source code |
| getFishingBaseRate.constant | Source code |
| getFishingBaseRate.linear | Source code |
| getFishingDeviatesBySeason | Source code |
| getFishingDeviatesBySeason.default | Source code |
| getFishingDeviatesBySeason.nonPeriodic | Source code |
| getFishingDeviatesBySeason.periodic | Source code |
| getFishingDeviatesByYear | Source code |
| getFishingMortality | Source code |
| getMortality | Source code |
| getMortalityDeviation | Source code |
| getOsmoseParameter | Source code |
| getPredationData | Source code |
| getReproductionData | Source code |
| getSelectivity | Source code |
| getSelectivityParameters | Source code |
| getSizeSpectrum | Source code |
| getSpeciesData | Source code |
| getVar | Man page Source code |
| getWhats | Source code |
| get_var | Man page Source code |
| get_var.osmose | Man page Source code |
| get_var.osmose.config | Man page Source code |
| getmfrow | Source code |
| init_firstyear | Source code |
| init_ncdf | Source code |
| init_sofia | Source code |
| initialize_osmose | Man page Source code |
| llw | Source code |
| lnorm2 | Source code |
| osmose | Man page |
| osmose-package | Man page |
| osmose.stackedpcent | Source code |
| osmose2R | Man page Source code |
| osmose2R.v3r0 | Source code |
| osmose2R.v3r1 | Source code |
| osmosePlots2D | Source code |
| osmose_calib_demo | Man page Source code |
| osmose_demo | Man page Source code |
| osmose_grid | Man page Source code |
| plot.diet | Source code |
| plot.mortalityRate | Source code |
| plot.osmose | Man page Source code |
| plot.osmose.abundance | Man page Source code |
| plot.osmose.abundanceByAge | Man page Source code |
| plot.osmose.abundanceBySize | Man page Source code |
| plot.osmose.abundanceByTL | Man page Source code |
| plot.osmose.biomass | Man page Source code |
| plot.osmose.biomassByAge | Man page Source code |
| plot.osmose.biomassBySize | Man page Source code |
| plot.osmose.biomassByTL | Man page Source code |
| plot.osmose.biomassPredPreyIni | Source code |
| plot.osmose.config | Man page Source code |
| plot.osmose.config.predation | Man page Source code |
| plot.osmose.config.reproduction | Man page Source code |
| plot.osmose.config.species | Man page Source code |
| plot.osmose.dietMatrix | Source code Source code |
| plot.osmose.dietMatrixbyAge | Source code |
| plot.osmose.dietMatrixbySize | Source code |
| plot.osmose.mortalityRate | Source code Source code |
| plot.osmose.mortalityRateByAge | Source code |
| plot.osmose.mortalityRateBySize | Source code |
| plot.osmose.predatorPressure | Source code |
| plot.osmose.predatorPressureByAge | Source code |
| plot.osmose.predatorPressureBySize | Source code |
| plot.osmose.yield | Man page Source code |
| plot.osmose.yieldByAge | Man page Source code |
| plot.osmose.yieldBySize | Man page Source code |
| plot.osmose.yieldN | Man page Source code |
| plot.osmose.yieldNByAge | Man page Source code |
| plot.osmose.yieldNBySize | Man page Source code |
| plot2DTsType1 | Source code |
| plotDietDisType1 | Source code |
| plotDietDisType2 | Source code |
| plotDietType1 | Source code |
| plotDietType2 | Source code |
| plotGrowthType1 | Source code |
| plotMortRateType1 | Source code |
| plotMortRateType2 | Source code |
| plotReproductionType1 | Source code |
| plotReproductionType2 | Source code |
| print.osmose | Man page Source code |
| print.summary.osmose | Man page Source code |
| process.dietMatrix | Source code |
| process.mortalityRate | Source code |
| read.biomass | Source code |
| read.cal | Source code |
| read.fecundity | Source code |
| read.yield | Source code |
| readOsmoseConfiguration | Man page Source code |
| readOsmoseFiles | Man page Source code |
| read_osmose | Man page Source code |
| rebinning | Source code |
| report | Man page Source code |
| report.osmose | Man page Source code |
| runOsmose | Man page Source code |
| run_osmose | Man page Source code |
| setOsmoseMaps | Source code |
| setOsmoseMaps.prediction.niche.models | Source code |
| summary.osmose | Man page Source code |
| summary.osmose.biomass | Source code |
| summary.osmose.dietMatrix | Man page Source code |
| summary.osmose.meanTL | Source code |
| summary.osmose.meanTLCatch | Source code |
| summary.osmose.mortalityRate | Man page Source code |
| updateCache | Man page Source code |
| update_ltl | Man page Source code |
| update_maps | Man page Source code |
| update_osmose | Man page Source code |
| viewDataList | Source code |
| write.osmose | Man page Source code |
| writeFishingFiles | Source code |
| writeMaps | Source code |
| writeOsmoseParameters | Source code |
| write_osmose | Man page Source code |
| write_osmose.default | Source code |
| write_osmose.list | Source code |
| write_osmose.osmose.configuration | Source code |
| write_osmose.osmose.initialization | Source code |
