Man pages for romagnolid/PAMES
Purity Assessment through clonal MEthylation Sites

bs_control_toy_dataToy data
bs_toy_sitesToy data
bs_tumor_toy_dataToy data
cluster_reductionRemove CpG sites too close to each other
compute_AUCCompute Area Under Curve
compute_island_indexesAssociated to each cpg islands the corresponding cpg site
compute_purityCompute Purity of Tumor Samples
control_toy_dataToy data
cpg_islandsCurated set of CpG islands
illumina27k_hg19Illumina 27k BeadChip mapped to Genome Reference hg19
illumina27k_hg38Illumina 27k BeadChip mapped to Genome Reference hg38
illumina450k_hg19Illumina 27k BeadChip mapped to Genome Reference hg19
illumina450k_hg38Illumina 450k BeadChip mapped to Genome Reference hg38
PAMESPAMES: Purity Assessment through clonal MEthylation Sites
reduce_islandReduce a matrix subset
reduce_to_islandsConvert beta values from Bisulphite Sequencing to single CpG...
select_informative_islandsSelect informative CpG islands
select_informative_sitesSelect informative CpG sites
too_closeCheck whether a site is too close to the other sites or not
tumor_toy_dataToy data
romagnolid/PAMES documentation built on Jan. 12, 2018, 12:09 p.m.