Man pages for romagnolid/PAMES
Purity Assessment from clonal MEthylation Sites

bs_toy_indexesBS Toy indexes
bs_toy_matrixBS Toy data
bs_toy_sitesBS Toy sites
cluster_reductionRemove CpG sites too close to each other
compute_AUCCompute Area Under Curve for a matrix of samples
compute_islands_indexesAssociate CpG islands to corresponding CpG sites
compute_purityCompute Purity of Tumor Samples
control_toy_dataIllumina Control Toy data
cpg_islandsDeprecated data
cpg_islands_dfCurated set of CpG islands
illumina27k_hg19Illumina 27k BeadChip mapped to Genome Reference hg19
illumina27k_hg38Illumina 27k BeadChip mapped to Genome Reference hg38
illumina450k_hg19Illumina 27k BeadChip mapped to Genome Reference hg19
illumina450k_hg38Illumina 450k BeadChip mapped to Genome Reference hg38
median_islandConvert CpG sites to one CpG island
PAMESPAMES: Purity Assessment from clonal MEthylation Sites
reduce_to_islandsConvert beta values from Bisulphite Sequencing to single CpG...
select_informative_islandsSelect informative CpG islands
select_informative_sitesSelect informative CpG sites
single_AUCCompute AUC a single vector
too_closeCheck whether a site is too close to the other sites or not
tumor_toy_dataIllumina Tumor Toy data
romagnolid/PAMES documentation built on May 3, 2018, 10:56 a.m.