Files in romagnolid/PAMES
Purity Assessment from clonal MEthylation Sites
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
PAMES.Rproj
R/PAMES.R
R/compute_AUC.R
R/compute_islands_indexes.R
R/compute_purity.R
R/data.R
R/reduce_to_islands.R
R/select_informative_islands.R
R/select_informative_sites.R
README.Rmd
README.md
TODO.md
data-raw/cpg_islands.rda
data-raw/illumina27k_hg19.txt.gz
data-raw/illumina27k_hg38.txt.gz
data-raw/illumina450k_hg19.txt.gz
data-raw/illumina450k_hg38.txt.gz
data-raw/raw.R
data/bs_toy_coordinates.rda
data/bs_toy_indexes.rda
data/bs_toy_matrix.rda
data/control_toy_data.rda
data/cpg_islands.rda
data/illumina27k_hg19.rda
data/illumina27k_hg38.rda
data/illumina450k_hg19.rda
data/illumina450k_hg38.rda
data/tumor_toy_data.rda
inst/CITATION
man/PAMES.Rd
man/bs_control_toy_data.Rd
man/bs_toy_indexes.Rd
man/bs_toy_sites.Rd
man/bs_tumor_toy_data.Rd
man/cluster_reduction.Rd
man/compute_AUC.Rd
man/compute_islands_indexes.Rd
man/compute_purity.Rd
man/control_toy_data.Rd
man/cpg_islands.Rd
man/illumina27k_hg19.Rd
man/illumina27k_hg38.Rd
man/illumina450k_hg19.Rd
man/illumina450k_hg38.Rd
man/reduce_island.Rd
man/reduce_to_islands.Rd
man/select_informative_islands.Rd
man/select_informative_sites.Rd
man/too_close.Rd
man/tumor_toy_data.Rd
tests/testthat.R
tests/testthat/test-PAMES.R
vignettes/PAMES.Rmd
vignettes/PAMES.html
