PAMES: PAMES: Purity Assessment from clonal MEthylation Sites
In romagnolid/PAMES: Purity Assessment from clonal MEthylation Sites
PAMES R Documentation
PAMES: Purity Assessment from clonal MEthylation Sites
Description
The PAMES package provides a set of functions to estimate
the level of purity or the tumor content of tumor samples.
Details
The basic workflow of PAMES requires to get_AUC (to evaluate tumor-control methylation differences),
find_informative_sites (to retrieve sites of interest),
and get_purity of tumor samples.
When working with methylation data obtained with other technologies (such as Bisulphite Sequencing),
users should must map their set of CpG sites to differentially methylated regions
(such as CpG islands) using data reduce_to_regions, then
get_AUC, find_informative_regions and finally
get_purity.
romagnolid/PAMES documentation built on Dec. 7, 2022, 10:37 a.m.
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| PAMES | R Documentation |
PAMES: Purity Assessment from clonal MEthylation Sites
Description
The PAMES package provides a set of functions to estimate the level of purity or the tumor content of tumor samples.
Details
The basic workflow of PAMES requires to get_AUC (to evaluate tumor-control methylation differences),
find_informative_sites (to retrieve sites of interest),
and get_purity of tumor samples.
When working with methylation data obtained with other technologies (such as Bisulphite Sequencing),
users should must map their set of CpG sites to differentially methylated regions
(such as CpG islands) using data reduce_to_regions, then
get_AUC, find_informative_regions and finally
get_purity.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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