calculatePercentGenes: Calculate percentage of transcripts of gene list.

In romanhaa/cerebroApp: Interactive visualization of scRNA-seq data with Cerebro

Description

Get percentage of transcripts of gene list compared to all transcripts per cell.

Usage

calculatePercentGenes(object, assay = "RNA", genes)

Arguments

object	Seurat object.
assay	Assay to pull counts from; defaults to 'RNA'. Only relevant in Seurat v3.0 or higher since the concept of assays wasn't implemented before.
genes	List(s) of genes.

Value

List of lists containing the percentages of expression for each provided gene list.

Examples

pbmc <- readRDS(system.file("extdata/v1.3/pbmc_seurat.rds",
  package = "cerebroApp"))
pbmc <- calculatePercentGenes(
  object = pbmc,
  assay = 'RNA',
  genes = list('example' = c('FCN1','CD3D'))
)

romanhaa/cerebroApp documentation built on Nov. 25, 2021, 5:29 p.m.