roonysgalbi/tispec: Calculates tissue specificity from RNA-seq data
Version 0.99.0

Implements the TAU algorithm to calculate tissue specificity. Given RNA-seq expression data in multiple tissues, the package calculates tissue specificity of each gene for each tissue. It also performs ranking to provide a set of optimum genes with high enough specificity and expression to facilitate experimental work in the laboratory when working on a tissue or gene of interest, or to rule out contamination of a tissue by qPCR.

Getting started

Package details

Bioconductor views GeneExpressionWorkflow
Maintainer
Licensefile LICENSE
Version0.99.0
URL https://github.com/roonysgalbi/tispec
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("roonysgalbi/tispec")
roonysgalbi/tispec documentation built on Aug. 17, 2018, 7:11 p.m.