roonysgalbi/tispec: Calculates tissue specificity from RNA-seq data

Implements the TAU algorithm to calculate tissue specificity. Given RNA-seq expression data in multiple tissues, the package calculates tissue specificity of each gene for each tissue. It also performs ranking to provide a set of optimum genes with high enough specificity and expression to facilitate experimental work in the laboratory when working on a tissue or gene of interest, or to rule out contamination of a tissue by qPCR.

Getting started

Package details

Bioconductor views GeneExpressionWorkflow
Licensefile LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
roonysgalbi/tispec documentation built on May 26, 2019, 1:33 a.m.