getMart: Get ensembl annotations

In roonysgalbi/tispec: Calculates tissue specificity from RNA-seq data

Description

Connects to ensembl archive to get id, name and type for every gene

Usage

getMart(x, y, z)

Arguments

x	species: 'human', 'macaque', or 'mouse'
y	ensembl archive version: 79..90
z	output from calcTau()

Value

Returns a dataframe containing tau values, tau expression fractions, ensembl gene ids, names, and types in the selected species from the selected ensembl archive version.

Examples

head(tauExp)
tauAnno <- getMart(x = 'mouse', y = 79, z = tauExp)
head(tauAnno)

roonysgalbi/tispec documentation built on May 26, 2019, 1:33 a.m.