Files in ropensci/EndoMineR
Functions to mine endoscopic and associated pathology datasets

.Rbuildignore
.github/CONTRIBUTING.md
.gitignore
.travis.yml
CONTRIBUTING.md
DESCRIPTION
EndoMineR.Rproj
NAMESPACE
NEWS.md R/BarrettsFunctions.R R/CleanUp.R R/EndoFakeData.R R/EndoMineR.R R/EndoMineR1.R R/data.R README.Rmd README.md
_pkgdown.yaml
codecov.yml
data-raw/EndoFakeData.R
data-raw/data/FindingsText
data-raw/data/FindingsTextColon.txt
data-raw/data/HistolClinDetText
data-raw/data/HistolDxText
data-raw/data/HistolMacDescription.txt
data-raw/data/HistolText
data-raw/data/HistolTextColon
data-raw/data/Histopath_ClinDetPhrasesColon.txt
data-raw/data/Histopath_DxRawColon.txt
data-raw/data/Histopath_MacDescripPhrasesColon.txt
data/ColonFinal.rda
data/Myendo.rda
data/Mypath.rda
data/PathDataFrameFinal.rda
data/PathDataFrameFinalColon.rda
data/TheOGDReportFinal.rda
docs/CONTRIBUTING.html
docs/articles/Analysis.R
docs/articles/Analysis.html
docs/articles/Analysis_files/figure-html/exampleEndoscChopperMeds-1.png
docs/articles/Analysis_files/figure-html/exampleHowManyTests-1.png
docs/articles/Barretts.R
docs/articles/Barretts.html
docs/articles/Barretts_files/figure-html/exampleBarrettsBasicNumbers-1.png
docs/articles/Barretts_files/figure-html/exampleBarrettsQuality_AnalysisBiopsyNumber-1.png
docs/articles/Barretts_files/figure-html/exampleBarrettsQuality_AnalysisDocumentation-1.png
docs/articles/Barretts_files/figure-html/exampleBarrettsSurveillance_PathDetection-1.png
docs/articles/Barretts_files/figure-html/exampleBarrettsTherapeuticsRFA_ByCatheter-1.png
docs/articles/Barretts_files/figure-html/exampleBarretts_LesionRecognitionEMR2-1.png
docs/articles/Data.R
docs/articles/Data.html
docs/articles/Data_files/figure-html/pressure-1.png
docs/articles/EndoMineR.R
docs/articles/EndoMineR.html
docs/articles/EndoMineRPrinciples.R
docs/articles/EndoMineRPrinciples.html
docs/articles/img/BarrettsGuide.png
docs/articles/img/EndoMinR_Clean.png
docs/articles/img/EndoMineROverView.png
docs/articles/img/EndoMineRPrincip_Dataset.png
docs/articles/img/EndoMineRPrincip_DiagYield.png
docs/articles/img/EndoMineRPrincip_Summary.png
docs/articles/img/EndoMineRSurveillanceDataset.png
docs/articles/img/EndoMineR_Circos.svg
docs/articles/img/EndoMineR_EndoscopyClean.png
docs/articles/img/EndoMineR_Extractor.svg
docs/articles/img/EndoMineR_FunctionStructure.svg
docs/articles/img/EndoMineR_HistopExtrapol.png
docs/articles/img/EndoMineR_Sankey.svg
docs/articles/img/EndoMineR_Surveillance.svg
docs/articles/img/TypicalReportForGastroDSEndoMinerVignette.svg
docs/articles/index.html
docs/articles/style.css
docs/authors.html
docs/docsearch.css
docs/extra.css
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/BarrettsAll.html
docs/reference/BarrettsBasicNumbers-1.png
docs/reference/BarrettsBasicNumbers.html
docs/reference/BarrettsBxQual-1.png
docs/reference/BarrettsBxQual.html
docs/reference/BarrettsDDRQual.html
docs/reference/BarrettsDocumentQual-1.png
docs/reference/BarrettsDocumentQual.html
docs/reference/BarrettsEMRGrades-1.png
docs/reference/BarrettsEMRGrades.html
docs/reference/BarrettsParisEMR.html
docs/reference/BarrettsPathDetectQual-1.png
docs/reference/BarrettsPathDetectQual.html
docs/reference/BarrettsSurveil.html
docs/reference/BarrettsSurveil_HospNum.html
docs/reference/Barretts_CRIM.html
docs/reference/Barretts_EventType.html
docs/reference/Barretts_FUType.html
docs/reference/Barretts_PathStage.html
docs/reference/Barretts_PragueScore.html
docs/reference/BarrettssRFACath-1.png
docs/reference/BarrettssRFACath.html
docs/reference/ColonFinal.html
docs/reference/ColumnCleanUp.html
docs/reference/ColumnCleanUpAll.html
docs/reference/EbdoMineR.html
docs/reference/EndoMineR.html
docs/reference/Endomerge2.html
docs/reference/EndoscAll.html
docs/reference/EndoscEndoscopist.html
docs/reference/EndoscFindings.html
docs/reference/EndoscIndications.html
docs/reference/EndoscInstrument.html
docs/reference/EndoscMeds.html
docs/reference/EndoscProcPerformed.html
docs/reference/Endoscopies.html
docs/reference/Extractor.html
docs/reference/Extractor2.html
docs/reference/GRS_Type_Assess_By_Unit.html
docs/reference/HistolAccessionNumber.html
docs/reference/HistolAll.html
docs/reference/HistolBxSize.html
docs/reference/HistolDx.html
docs/reference/HistolExtrapolDx.html
docs/reference/HistolHistol.html
docs/reference/HistolMacDescrip.html
docs/reference/HistolNumbOfBx.html
docs/reference/Histop_df.html
docs/reference/HowManyTests-1.png
docs/reference/HowManyTests.html
docs/reference/ListLookup.html
docs/reference/MetricByEndoscopist-1.png
docs/reference/MetricByEndoscopist.html
docs/reference/Myendo.html
docs/reference/Mypath.html
docs/reference/NegativeRemove.html
docs/reference/NewLines.html
docs/reference/NumberPerformed.html
docs/reference/PathDataFrameFinal.html
docs/reference/PathDataFrameFinalColon.html
docs/reference/PatientFlow_CircosPlots-1.png
docs/reference/PatientFlow_CircosPlots-2.png
docs/reference/PatientFlow_CircosPlots-3.png
docs/reference/PatientFlow_CircosPlots.html
docs/reference/PolypLocator.html
docs/reference/SurveilCapacity.html
docs/reference/SurveilFirstTest.html
docs/reference/SurveilLastTest.html
docs/reference/SurveilLastToNow.html
docs/reference/SurveilTimeByRow.html
docs/reference/SurveySankey.html
docs/reference/TermStandardLocation.html
docs/reference/TheOGDReportFinal.html
docs/reference/figures/BarrettsBasicNumbers.svg
docs/reference/figures/BarrettsEMR_By_Pathology.svg
docs/reference/figures/BarrettsRFA_CatheterType.svg
docs/reference/figures/Barretts_Shortfall.png
docs/reference/figures/EndoMinR_Clean.png
docs/reference/figures/EndoMineR_Barretts.svg
docs/reference/figures/EndoMineR_BarrettsClean.png
docs/reference/figures/EndoMineR_Circos.svg
docs/reference/figures/EndoMineR_EndoscopyClean.svg
docs/reference/figures/EndoMineR_Extractor.svg
docs/reference/figures/EndoMineR_FunctionStructure.svg
docs/reference/figures/EndoMineR_HistopExtrapol.svg
docs/reference/figures/EndoMineR_Sankey.svg
docs/reference/figures/EndoMineR_Surveillance.svg
docs/reference/figures/GradeBarretts.svg
docs/reference/figures/MetricByEndoscopist.png
docs/reference/figures/Rplot.png
docs/reference/figures/Rplot01.svg
docs/reference/figures/TypicalReportForGastroDSEndoMinerVignette.svg
docs/reference/index.html
man/BarrettsAll.Rd man/BarrettsBasicNumbers.Rd man/BarrettsBxQual.Rd man/BarrettsDDRQual.Rd man/BarrettsDocumentQual.Rd man/BarrettsEMRGrades.Rd man/BarrettsParisEMR.Rd man/BarrettsPathDetectQual.Rd man/BarrettsSurveil.Rd man/BarrettsSurveil_HospNum.Rd man/Barretts_CRIM.Rd man/Barretts_EventType.Rd man/Barretts_FUType.Rd man/Barretts_PathStage.Rd man/Barretts_PragueScore.Rd man/BarrettssRFACath.Rd man/ColonFinal.Rd man/ColumnCleanUp.Rd man/ColumnCleanUpAll.Rd man/EndoMineR.Rd man/Endomerge2.Rd man/EndoscAll.Rd man/EndoscEndoscopist.Rd man/EndoscFindings.Rd man/EndoscIndications.Rd man/EndoscInstrument.Rd man/EndoscMeds.Rd man/EndoscProcPerformed.Rd man/Extractor.Rd man/Extractor2.Rd man/GRS_Type_Assess_By_Unit.Rd man/HistolAccessionNumber.Rd man/HistolAll.Rd man/HistolBxSize.Rd man/HistolDx.Rd man/HistolExtrapolDx.Rd man/HistolHistol.Rd man/HistolMacDescrip.Rd man/HistolNumbOfBx.Rd man/HowManyTests.Rd man/ListLookup.Rd man/MetricByEndoscopist.Rd man/Myendo.Rd man/Mypath.Rd man/NegativeRemove.Rd man/NumberPerformed.Rd man/PathDataFrameFinal.Rd man/PathDataFrameFinalColon.Rd man/PatientFlow_CircosPlots.Rd man/PolypLocator.Rd man/SurveilCapacity.Rd man/SurveilFirstTest.Rd man/SurveilLastTest.Rd man/SurveilLastToNow.Rd man/SurveilTimeByRow.Rd man/SurveySankey.Rd man/TermStandardLocation.Rd man/TheOGDReportFinal.Rd
man/figures/BarrettsBasicNumbers.svg
man/figures/BarrettsEMR_By_Pathology.svg
man/figures/BarrettsRFA_CatheterType.svg
man/figures/Barretts_Shortfall.png
man/figures/EndoMinR_Clean.png
man/figures/EndoMineR_Barretts.svg
man/figures/EndoMineR_BarrettsClean.png
man/figures/EndoMineR_Circos.svg
man/figures/EndoMineR_EndoscopyClean.svg
man/figures/EndoMineR_Extractor.svg
man/figures/EndoMineR_FunctionStructure.svg
man/figures/EndoMineR_HistopExtrapol.svg
man/figures/EndoMineR_Sankey.svg
man/figures/EndoMineR_Surveillance.svg
man/figures/GradeBarretts.svg
man/figures/MetricByEndoscopist.png
man/figures/Rplot.png
man/figures/Rplot01.svg
man/figures/TypicalReportForGastroDSEndoMinerVignette.svg
paper/paper.bib
paper/paper.html
paper/paper.md
pkgdown/extra.css
tests/testthat.R tests/testthat/test.R vignettes/Analysis.R vignettes/Analysis.Rmd
vignettes/Analysis.html
vignettes/Barretts.R vignettes/Barretts.Rmd
vignettes/Barretts.html
vignettes/Data.R vignettes/Data.Rmd
vignettes/Data.html
vignettes/EndoMineR.R vignettes/EndoMineR.Rmd
vignettes/EndoMineR.html
vignettes/EndoMineRPrinciples.R vignettes/EndoMineRPrinciples.Rmd
vignettes/EndoMineRPrinciples.html
vignettes/img/BarrettsGuide.png
vignettes/img/EndoMinR_Clean.png
vignettes/img/EndoMineRLogo.png
vignettes/img/EndoMineROverView.png
vignettes/img/EndoMineRPrincip_Dataset.png
vignettes/img/EndoMineRPrincip_DiagYield.png
vignettes/img/EndoMineRPrincip_Summary.png
vignettes/img/EndoMineRSurveillanceDataset.png
vignettes/img/EndoMineR_Circos.svg
vignettes/img/EndoMineR_EndoscopyClean.png
vignettes/img/EndoMineR_Extractor.svg
vignettes/img/EndoMineR_FunctionStructure.svg
vignettes/img/EndoMineR_HistopExtrapol.png
vignettes/img/EndoMineR_Sankey.svg
vignettes/img/EndoMineR_Surveillance.svg
vignettes/img/TypicalReportForGastroDSEndoMinerVignette.svg
vignettes/style.css
ropensci/EndoMineR documentation built on May 5, 2018, 7:59 a.m.