BarrettsAll: Run all the basic Barrett's functions

In ropensci/EndoMineR: Functions to mine endoscopic and associated pathology datasets

Run all the basic Barrett's functions

Description

Function to encapsulate all the Barrett's functions together. This includes the Prague score and the worst pathological grade and then feeds both of these things into the follow up function. The output is a dataframe with all the original data as well as the new columns that have been created.

Usage

BarrettsAll(
  Endodataframe,
  EndoReportColumn,
  EndoReportColumn2,
  Pathdataframe,
  PathColumn
)

Arguments

Endodataframe	endoscopy dataframe of interest
EndoReportColumn	Endoscopy report field of interest as a string vector
EndoReportColumn2	Second endoscopy report field of interest as a string vector
Pathdataframe	pathology dataframe of interest
PathColumn	Pathology report field of interest as a string vector

Value

Newdf

See Also

Other Disease Specific Analysis - Barretts Data: BarrettsBxQual(), BarrettsParisEMR(), Barretts_FUType(), Barretts_PathStage(), Barretts_PragueScore()

Examples

Barretts_df <- BarrettsAll(Myendo, "Findings", "OGDReportWhole", Mypath, "Histology")

ropensci/EndoMineR documentation built on March 14, 2023, 3:58 a.m.