ropensci/phylotaR: Automated Phylogenetic Sequence Cluster Identification from 'GenBank'

A pipeline for the identification, within taxonomic groups, of orthologous sequence clusters from 'GenBank' <https://www.ncbi.nlm.nih.gov/genbank/> as the first step in a phylogenetic analysis. The pipeline depends on a local alignment search tool and is, therefore, not dependent on differences in gene naming conventions and naming errors.

Getting started

Package details

MaintainerDom Bennett <[email protected]>
LicenseMIT + file LICENSE
Version1.2.0
URL https://docs.ropensci.org/phylotaR https://github.com/ropensci/phylotaR#readme
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("ropensci/phylotaR")
ropensci/phylotaR documentation built on Jan. 16, 2020, 11:47 a.m.