batcher: Download in batches

Description Usage Arguments Value See Also

View source: R/tools-api.R

Description

Run downloader function in batches for sequences or taxonomic records

Usage

1
batcher(ids, func, ps, lvl = 0)

Arguments

ids

Vector of record ids

func

Downloader function

ps

Parameters list, generated with parameters()

lvl

Integer, number of message indentations indicating code depth.

Value

Vector of records

vector of rentrez function results

See Also

Other run-private: blast_clstr, blast_filter, blast_setup, blast_sqs, blastcache_load, blastcache_save, blastdb_gen, blastn_run, cache_rm, cache_setup, clade_select, clstr2_calc, clstr_all, clstr_direct, clstr_sqs, clstr_subtree, clstrarc_gen, clstrarc_join, clstrrec_gen, clstrs_calc, clstrs_join, clstrs_merge, clstrs_renumber, clstrs_save, cmdln, descendants_get, download_obj_check, error, gb_extract, hierarchic_download, info, ncbicache_load, ncbicache_save, obj_check, obj_load, obj_save, outfmt_get, parameters_load, parameters_setup, parent_get, progress_init, progress_read, progress_reset, progress_save, rank_get, rawseqrec_breakdown, safely_connect, search_and_cache, searchterm_gen, seeds_blast, seq_download, seqarc_gen, seqrec_augment, seqrec_convert, seqrec_gen, seqrec_get, sids_check, sids_get, sids_load, sids_save, sqs_count, sqs_save, stage_args_check, stages_run, tax_download, taxdict_gen, taxtree_gen, txids_get, txnds_count, warn


ropensci/phylotaR documentation built on Jan. 16, 2020, 11:47 a.m.