extract_clean_sequence: Extract clean sequence from sequence part

In ropensci/restez: Create and Query a Local Copy of 'GenBank' in R

Extract clean sequence from sequence part

Description

Return clean sequence from seqrecpart of a GenBank record

Usage

extract_clean_sequence(seqrecpart, max_len = 1e+08)

Arguments

seqrecpart	Sequence part of a GenBank record, character
max_len	Number: maximum number of characters allowed in a single record before splitting the record into parts. Does not affect output, but only internal calculations, so generally should not be changed. Default = 1e8.

Details

If element is not found, ” returned.

Value

character

See Also

Other private: add_rcrd_log(), cat_line(), char(), check_connection(), cleanup(), connected(), connection_get(), db_download_intern(), db_sqlngths_get(), db_sqlngths_log(), dir_size(), dwnld_path_get(), dwnld_rcrd_log(), entrez_fasta_get(), entrez_gb_get(), extract_accession(), extract_by_patterns(), extract_definition(), extract_features(), extract_inforecpart(), extract_keywords(), extract_locus(), extract_organism(), extract_seqrecpart(), extract_sequence(), extract_version(), file_download(), filename_log(), flatfile_read(), gb_build(), gb_df_create(), gb_df_generate(), gb_sql_add(), gb_sql_query(), gbrelease_check(), gbrelease_get(), gbrelease_log(), has_data(), identify_downloadable_files(), last_add_get(), last_dwnld_get(), last_entry_get(), latest_genbank_release_notes(), latest_genbank_release(), message_missing(), mock_def(), mock_gb_df_generate(), mock_org(), mock_rec(), mock_seq(), predict_datasizes(), readme_log(), restez_connect(), restez_disconnect(), restez_path_check(), restez_rl(), search_gz(), seshinfo_log(), setup(), slctn_get(), slctn_log(), sql_path_get(), status_class(), stat(), testdatadir_get()

ropensci/restez documentation built on April 21, 2024, 2:40 p.m.