In ropenscilabs/taxa: Classes for Storing and Manipulating Taxonomic Data
Genbank FASTA
>AC073210.8 Homo sapiens BAC clone RP11-460N20 from 7, complete sequence
GAATTCTTCAGGTAGCTTCCTAGGGTTTCCAAGGCAATACAAGAAGAATTTTGATAGGCAGGAAAATGCA...
UNITE QIIME
SH099456.05FU_FJ357315_refs k__Fungi;p__Ascomycota;c__Dothideomycetes;o__Pleosporales;f__Pleosporaceae;g__Embellisia;s__Embellisia_planifunda
Greengenes
1111875 k__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Limnohabitans; s__
RDP
>S000448483 Sparassis crispa; MBUH-PIRJO&ILKKA94-1587/ss5 Lineage=Root;rootrank;Fungi;domain;Basidiomycota;phylum;Agaricomycetes;class;Polyporales;order;Sparassidaceae;family;Sparassis;genus
SILVA
>GCVF01000431.1.2369 Bacteria;Proteobacteria;Gammaproteobacteria;Oceanospirillales;Alcanivoraceae;Alcanivorax;Thalassiosira rotula
CGUGCACGGUGGAUGCCUUGGCAGCCAGAGGCGAUGAAGGACGUUGUAGCCUGCGAUAAGCUCCGGUUAGGUGGCAAACA
Smithsonian Museum of Natural History: Mammals
smith_data <- readr::read_csv("datasets/SNMNH.csv")
GBIF: archea
gbif_data <- readr::read_tsv("datasets/gbif_archea.csv")
Atlas of Living Australia
ropenscilabs/taxa documentation built on Feb. 23, 2024, 6:31 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Genbank FASTA
>AC073210.8 Homo sapiens BAC clone RP11-460N20 from 7, complete sequence GAATTCTTCAGGTAGCTTCCTAGGGTTTCCAAGGCAATACAAGAAGAATTTTGATAGGCAGGAAAATGCA...
UNITE QIIME
SH099456.05FU_FJ357315_refs k__Fungi;p__Ascomycota;c__Dothideomycetes;o__Pleosporales;f__Pleosporaceae;g__Embellisia;s__Embellisia_planifunda
Greengenes
1111875 k__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Limnohabitans; s__
RDP
>S000448483 Sparassis crispa; MBUH-PIRJO&ILKKA94-1587/ss5 Lineage=Root;rootrank;Fungi;domain;Basidiomycota;phylum;Agaricomycetes;class;Polyporales;order;Sparassidaceae;family;Sparassis;genus
SILVA
>GCVF01000431.1.2369 Bacteria;Proteobacteria;Gammaproteobacteria;Oceanospirillales;Alcanivoraceae;Alcanivorax;Thalassiosira rotula CGUGCACGGUGGAUGCCUUGGCAGCCAGAGGCGAUGAAGGACGUUGUAGCCUGCGAUAAGCUCCGGUUAGGUGGCAAACA
Smithsonian Museum of Natural History: Mammals
smith_data <- readr::read_csv("datasets/SNMNH.csv")
GBIF: archea
gbif_data <- readr::read_tsv("datasets/gbif_archea.csv")
Atlas of Living Australia
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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