Files in ropenscilabs/taxa

Classes for Storing and Manipulating Taxonomic Data

.Rbuildignore

.gitattributes

.github/CODE_OF_CONDUCT.md .github/CONTRIBUTING.md .github/issue_template.md .github/pull_request_template.md

.gitignore

.travis.yml

CONDUCT.md

CRAN-SUBMISSION

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/classification.R R/documentation.R R/getter_setter_s3_generics.R R/globals.R R/imports.R R/internal.R R/printing_style.R R/s3_generics.R R/taxon.R R/taxon_authority.R R/taxon_db.R R/taxon_db_def.R R/taxon_id.R R/taxon_rank.R R/taxon_rank_level.R R/taxonomy.R R/zzz.R README.Rmd README.md code_of_conduct.md

codecov.yml

cran-comments.md

hex_sticker/hex_sticker.png

hex_sticker/hex_sticker.svg

inst/CITATION

inst/ignore/taxa-class.R inst/ignore/taxa-extra.R inst/ignore/taxa-grouping.R inst/ignore/taxa-name.R man-roxygen/pick_egs.R man-roxygen/pop_egs.R man-roxygen/span_egs.R man-roxygen/taxmapegs.R man-roxygen/taxonomyegs.R man/as_data_frame.Rd man/as_taxon.Rd man/check_taxon_rank_order.Rd man/classification.Rd man/contains.Rd man/database_ref.Rd man/db_ref.Rd man/default_db_ref.Rd man/delete_unused_class_taxa.Rd man/duplicated_index.Rd man/duplicated_index_taxonomy.Rd man/ends_with.Rd man/everything.Rd

man/figures/lifecycle-archived.svg

man/figures/lifecycle-defunct.svg

man/figures/lifecycle-deprecated.svg

man/figures/lifecycle-experimental.svg

man/figures/lifecycle-maturing.svg

man/figures/lifecycle-questioning.svg

man/figures/lifecycle-retired.svg

man/figures/lifecycle-soft-deprecated.svg

man/figures/lifecycle-stable.svg

man/font_default.Rd man/font_na.Rd man/font_punct.Rd man/font_secondary.Rd man/font_tax_name.Rd man/grapes-greater-than-grapes.Rd man/grapes-in-grapes.Rd man/impute_order_na.Rd man/interleave.Rd man/internodes.Rd man/is_classification.Rd man/is_internode.Rd man/is_leaf.Rd man/is_root.Rd man/is_stem.Rd man/is_taxon.Rd man/is_taxon_authority.Rd man/is_taxon_db.Rd man/is_taxon_id.Rd man/is_taxon_rank.Rd man/is_taxon_rank_level.Rd man/is_taxonomy.Rd man/is_valid_regex.Rd man/leaves.Rd man/limited_print.Rd man/matches.Rd man/n_leaves.Rd man/n_subtaxa.Rd man/n_supertaxa.Rd man/new_classification.Rd man/new_taxon.Rd man/new_taxon_authority.Rd man/new_taxon_db.Rd man/new_taxon_db_def.Rd man/new_taxon_id.Rd man/new_taxon_rank.Rd man/new_taxon_rank_level.Rd man/new_taxonomy.Rd man/num_range.Rd man/one_of.Rd man/print_with_color.Rd man/printed_classification.Rd man/printed_taxon.Rd man/printed_taxon_authority.Rd man/printed_taxon_id.Rd man/printed_taxon_rank.Rd man/printed_taxon_rank_level.Rd man/printed_taxonomy.Rd man/rank_level_color_funcs.Rd man/rank_ref.Rd man/roots.Rd man/starts_with.Rd man/stems.Rd man/subtaxa.Rd man/supertaxa.Rd man/tax_auth.Rd man/tax_author.Rd man/tax_cite.Rd man/tax_date.Rd man/tax_db.Rd man/tax_id.Rd man/tax_name.Rd man/tax_rank.Rd man/taxa_casting_funcs.Rd man/taxa_coercion_funcs.Rd man/taxa_comparison_funcs.Rd man/taxa_printing_funcs.Rd man/taxa_taxon.Rd man/taxa_taxon_authority.Rd man/taxa_taxon_db.Rd man/taxa_taxon_id.Rd man/taxa_taxon_rank.Rd man/taxa_taxonomy.Rd man/taxon.Rd man/taxon_authority.Rd man/taxon_db.Rd man/taxon_db_def.Rd man/taxon_id.Rd man/taxon_rank.Rd man/taxon_rank_level.Rd man/taxonomy.Rd man/unname_fields.Rd notes/009--adapting_taxmap_utility_functions.Rmd notes/taxize_integration.Rmd notes/vctrs_changes_for_scott.Rmd

notes/vctrs_changes_for_scott.html

presentations/.gitignore

presentations/20_min/.gitignore

presentations/20_min/format_examples.Rmd

presentations/20_min/images/ars_icon.png

presentations/20_min/images/atlas_icon.jpg

presentations/20_min/images/bmnh_icon.jpg

presentations/20_min/images/class_diagram.png

presentations/20_min/images/class_diagram_selected.png

presentations/20_min/images/gbif_icon.png

presentations/20_min/images/greengenes_icon.png

presentations/20_min/images/grunwaldlab.jpg

presentations/20_min/images/heat_tree_matrix.png

presentations/20_min/images/inaturalist_icon.png

presentations/20_min/images/metacoder_multiroot.png

presentations/20_min/images/ncbi_icon.png

presentations/20_min/images/nhm_icon.gif

presentations/20_min/images/nhm_icon.jpg

presentations/20_min/images/osu_icon.png

presentations/20_min/images/parsing_guide.png

presentations/20_min/images/r_icon.jpg

presentations/20_min/images/ropensci_icon.png

presentations/20_min/images/smith_icon.jpg

presentations/20_min/images/taxa_header.png

presentations/20_min/images/taxmap_printed.png

presentations/20_min/images/taxonomy.png

presentations/20_min/images/unite_icon.png

presentations/20_min/images/user_icon.png

presentations/20_min/outline.Rmd presentations/20_min/presentation.Rmd presentations/20_min/presentation.pdf

presentations/5_min/class_diagram.png

presentations/5_min/database_format_table.png

presentations/5_min/lightning_talk.Rmd presentations/5_min/lightning_talk.pdf

presentations/5_min/parsing_guide.png

presentations/5_min/taxmap_printed.png

scratch/class_diagram.png

scratch/class_diagram.svg

scratch/example_analysis_figure.png

scratch/example_analysis_for_paper.Rmd scratch/getters_setters.Rmd scratch/goals_of_the_taxa_package.Rmd scratch/list_nameing_test.R scratch/old_code/dataset_documentation.R scratch/old_code/hierarchies.R scratch/old_code/hierarchy.R scratch/old_code/lazyhelpers.R scratch/old_code/package.R scratch/old_code/pick.R scratch/old_code/pop.R scratch/old_code/span.R scratch/old_code/taxmap--class.R scratch/old_code/taxmap--docs.R scratch/old_code/taxmap--internal.R scratch/old_code/taxmap--option_parsers.R scratch/old_code/taxmap--parsers.R scratch/old_code/taxmap--printers.R scratch/old_code/taxmap--s3.R scratch/old_code/taxonomy--class.R scratch/old_code/taxonomy--docs.R scratch/old_code/taxonomy--internal.R scratch/old_code/taxonomy--s3.R scratch/old_code/test--database.R scratch/old_code/test--hierarchies.R scratch/old_code/test--hierarchy.R scratch/old_code/test--pick.R scratch/old_code/test--pop.R scratch/old_code/test--span.R scratch/old_code/test--taxa.R scratch/old_code/test--taxmap.R scratch/old_code/test--taxmap_parsers.R scratch/old_code/test--taxon.R scratch/old_code/test--taxon_id.R scratch/old_code/test--taxon_name.R scratch/old_code/test--taxon_rank.R scratch/old_code/test--taxonomy.R

scratch/old_code/vignettes/class_diagram.png

scratch/old_code/vignettes/class_diagram.svg

scratch/old_code/vignettes/parsing_guide.png

scratch/old_code/vignettes/taxa-introduction.Rmd

scratch/old_code/vignettes/taxa_class_ideas.dia

scratch/old_code/vignettes/taxa_class_ideas.png

scratch/parsing_guide.png

scratch/parsing_guide.svg

scratch/taxa_class_ideas.dia

scratch/taxa_class_ideas.png

scratch/taxon_name_name_bug.R scratch/tree_terminology.Rmd

taxa.Rproj

tests/testthat.R

tests/testthat/print_outputs/taxon.txt

tests/testthat/print_outputs/taxon_authority.txt

tests/testthat/print_outputs/taxon_authority_data_frame.txt

tests/testthat/print_outputs/taxon_authority_tibble.txt

tests/testthat/print_outputs/taxon_data_frame.txt

tests/testthat/print_outputs/taxon_db.txt

tests/testthat/print_outputs/taxon_db_data_frame.txt

tests/testthat/print_outputs/taxon_db_def.txt

tests/testthat/print_outputs/taxon_db_tibble.txt

tests/testthat/print_outputs/taxon_id.txt

tests/testthat/print_outputs/taxon_id_data_frame.txt

tests/testthat/print_outputs/taxon_id_tibble.txt

tests/testthat/print_outputs/taxon_rank.txt

tests/testthat/print_outputs/taxon_tibble.txt

tests/testthat/print_outputs/taxonomy.txt

tests/testthat/test--classification.R tests/testthat/test--taxon.R tests/testthat/test--taxon_authority.R tests/testthat/test--taxon_db.R tests/testthat/test--taxon_db_def.R tests/testthat/test--taxon_id.R tests/testthat/test--taxon_rank.R tests/testthat/test--taxonomy.R

ropenscilabs/taxa documentation built on Feb. 23, 2024, 6:31 p.m.