taxon_db_def: Taxon database definition class
In ropenscilabs/taxa: Classes for Storing and Manipulating Taxonomic Data

taxon_db_def

R Documentation

Taxon database definition class

Description

Used to store information on taxonomic databases that is used to validate information in other classes.

Usage

taxon_db_def(
  name = character(),
  url = NA_character_,
  desc = NA_character_,
  id_regex = NA_character_,
  rank_levels = rep(list(NULL), length(name))
)

Arguments

`name`	Name of the database in lower case. Inputs will be transformed to a `character` vector.
`url`	URL of the database website. Inputs will be transformed to a `character` vector.
`desc`	Description of the database. Inputs will be transformed to a `character` vector.
`id_regex`	A regular expression for taxon IDs of the database. Inputs will be transformed to a `character` vector.
`rank_levels`	Valid taxonomic ranks for the database. Should be a list of `numeric` vectors named by taxonomic ranks.