plotDispEsts: Plot Dispersion Estimates

Description Usage Arguments Value Author(s) See Also Examples

Description

Method support for plotting the dispersion of counts stored in a bcbioRNASeq object. Here we're generating a DESeqDataSet object on the fly, which already has method support for plotting dispersion, provided by the DESeq2 package.

Usage

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## S4 method for signature 'bcbioRNASeq'
plotDispEsts(object, ...)

Arguments

object

Object.

...

Passthrough arguments to DESeq2::plotDispEsts().

Value

ggplot.

Author(s)

Michael Steinbaugh

See Also

Other Quality Control Functions: plot5Prime3PrimeBias, plotCorrelationHeatmap, plotCountDensity, plotCountsPerGene, plotExonicMappingRate, plotGenderMarkers, plotGeneSaturation, plotGenesDetected, plotIntronicMappingRate, plotMappedReads, plotMappingRate, plotMeanSD, plotPCACovariates, plotPCA, plotRRNAMappingRate, plotTotalReads

Examples

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# bcbioRNASeq ====
plotDispEsts(bcb_small)

# Custom colors, using DESeq2 parameters
plotDispEsts(
    bcb_small,
    genecol = "gray",
    fitcol = "purple",
    finalcol = "orange"
)

roryk/bcbioRnaseq documentation built on May 27, 2019, 10:44 p.m.