updateObject: Update Object

Description Usage Arguments Value Legacy bcbioRNADataSet class Legacy objects created with bcbioRnaseq Author(s) See Also Examples

Description

Update old objects created by the bcbioRNASeq package. The session information metadata is preserved from the time when the bcbio data was originally loaded into R.

Usage

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## S4 method for signature 'bcbioRNASeq'
updateObject(object, rowRanges)

Arguments

object

Object.

rowRanges

GRanges object that defines the row annotations. Since we converted to RangedSummarizedExperiment in v0.2.0, this option had to be added to enable updating of newly required rowRanges() slot.

Value

bcbioRNASeq.

Legacy bcbioRNADataSet class

Support for bcbioRNADataSet objects was dropped in v0.2.0 of the package. If you need to load one of these objects, please install an older release.

Legacy objects created with bcbioRnaseq

The previous bcbioRnaseq package (note case) must be reinstalled to load objects from versions <= 0.0.20. We changed the name of the package to bcbioRNASeq starting in v0.0.21.

Author(s)

Michael Steinbaugh

See Also

Other S4 Class Definition: [,bcbioRNASeq,ANY,ANY,ANY-method, bcbioRNASeq, coerce, show

Examples

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roryk/bcbioRnaseq documentation built on May 27, 2019, 10:44 p.m.