topTables: Top Tables of Differential Expression Results

In roryk/bcbioRnaseq: RNA-Seq Utilities

Description

Top Tables of Differential Expression Results

Usage

topTables(object, ...)

## S4 method for signature 'DESeqResults'
topTables(object, n = 50L, coding = FALSE)

## S4 method for signature 'list'
topTables(object, n = 50L, coding = FALSE)

Arguments

object	resultsTables() return list.
...	Additional arguments.
n	Number genes to report.
coding	Whether to only return coding genes.

Value

kable.

Author(s)

Michael Steinbaugh

See Also

Other R Markdown Functions: prepareRNASeqTemplate

Examples

# DESeqResults ====
# Minimal return
topTables(res_small, n = 5L)

# resultsTables list ====
# Return with gene annotations and DESeq2 normalized counts
x <- resultsTables(
    results = res_small,
    counts = dds_small
)
topTables(x, n = 5L)

roryk/bcbioRnaseq documentation built on May 27, 2019, 10:44 p.m.