| add_bams | Add BAMs to Sample Sheet |
| annotate_peaks | Annotate Peaks |
| bowtie2_align | Bowtie2 Alignment |
| bowtie2_index | Bowtie2 Index Generation |
| call_peaks | Peak Calling |
| count_features | Count Features |
| fastqc | Quality Control of Fastq Files |
| get_seqs | Get Genomic Sequences |
| make_bigwigs | Generate Bigwigs |
| print_message | Standard Message |
| pull_setting | Pull Settings |
| retrieve_reads | Retrieve Reads from SRA |
| set_settings | Set Settings. |
| star_align | STAR Alignment |
| star_index | STAR Genome Generation |
| zent_obj-class | Zent Class |
| zent_tools | Zent Object Constructor Function |
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