call_peaks: Peak Calling
In rpolicastro/ZentTools: What the Package Does (One Line, Title Case)

Peak Calling

call_peaks(
  zent_obj,
  outdir = getwd(),
  genome_size,
  qvalue_cutoff = 0.05,
  broad_peaks = FALSE,
  broad_qvalue_cutoff = 0.1
)

`zent_obj`	ZentTools object.
`outdir`	Output directory for peak files.
`genome_size`	Effective genome size.
`qvalue_cutoff`	q-value cutoff for peak calling.
`broad_peaks`	Whether the peaks are broad or not.
`broad_qvalue_cutoff`	If 'broad_peaks' is set, This controls the q-value cutoff of the broad peaks.