star_index: STAR Genome Generation
In rpolicastro/ZentTools: What the Package Does (One Line, Title Case)
View source: R/star_alignment.R
Description
STAR Genome Generation
Usage
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star_index(
zent_obj,
outdir = getwd(),
genome_assembly,
genome_annotation,
sa_bases = NA,
ram_limit = NA
)
Arguments
zent_obj
Zent object.
outdir
Output directory for STAR genome index.
genome_assembly
Path to genome fasta file.
genome_annotation
Path to genome gtf file.
sa_bases
Number of suffix array base.
ram_limit
Upper memory limit for genome generate.
rpolicastro/ZentTools documentation built on Feb. 26, 2021, 6:21 p.m.
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View source: R/star_alignment.R
Description
STAR Genome Generation
Usage
1 2 3 4 5 6 7 8 | star_index(
zent_obj,
outdir = getwd(),
genome_assembly,
genome_annotation,
sa_bases = NA,
ram_limit = NA
)
|
Arguments
zent_obj |
Zent object. |
outdir |
Output directory for STAR genome index. |
genome_assembly |
Path to genome fasta file. |
genome_annotation |
Path to genome gtf file. |
sa_bases |
Number of suffix array base. |
ram_limit |
Upper memory limit for genome generate. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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