Man pages for rpolicastro/deepTSSscrubbeR
What the Package Does (One Line, Title Case)
| deep_tss | deepTSSscrubbeR constructor function |
| encode_genomic-function | One Hot Encode Genomic Sequences |
| encode_shape-function | Retrieve DNA Shape |
| encode_signal-function | Encode Surrounding Signal |
| encode_soft-function | One Hot Encode Soft-clipped Bases |
| encode_status-function | Encode TSS Status |
| expand_ranges | Expand Ranges |
| export_bedgrpahs-function | Export TSS Bedgraphs |
| export_encoded-function | Export Encoded |
| export_raw-function | Export Raw |
| export_report-function | Export Report |
| get_sequences-function | Retrieve Sequences |
| get_signal-function | Get Surrounding Signal |
| get_softclip-function | Get Softclipped Bases |
| mark_status | Mark Status |
| one_hot_encode-function | One Hot Encode a Sequence (Deprecated) |
| split_data | Train/Test Split |
| tss_annotate-function | Annotate the TSSs |
| tss_evaluate-function | Evaluate TSS Model |
| tss_model | Build TSS Model |
| tss_predict-function | Predict TSS artifact probabilities |
| tss_train-function | Train TSS Model |
