mark_status: Mark Status

Description Usage Arguments Value

View source: R/mark_status.R

Description

Mark status as spurious based on read threshold

Usage

1
mark_status(deep_obj, lower = 2, upper = 10, use_annotation = FALSE)

Arguments

deep_obj

deep_tss object

lower

Reads less than or equal to 'lower' will be marked as spurious

upper

Reads greater than or equal to 'upper' will be marked as good

use_annotation

If TRUE will ignore upper and lower bounds and instead pick a sample of TSSs within and outside of annotated promoters

Value

GRanges object with status column indicating spurious (1) or not (0)


rpolicastro/deepTSSscrubbeR documentation built on March 20, 2020, 5:38 a.m.