mark_status: Mark Status

In rpolicastro/deepTSSscrubbeR: What the Package Does (One Line, Title Case)

Description

Mark status as spurious based on read threshold

Usage

mark_status(deep_obj, lower = 2, upper = 10, use_annotation = FALSE)

Arguments

deep_obj	deep_tss object
lower	Reads less than or equal to 'lower' will be marked as spurious
upper	Reads greater than or equal to 'upper' will be marked as good
use_annotation	If TRUE will ignore upper and lower bounds and instead pick a sample of TSSs within and outside of annotated promoters

Value

GRanges object with status column indicating spurious (1) or not (0)

rpolicastro/deepTSSscrubbeR documentation built on March 20, 2020, 5:38 a.m.