deep_tss | deepTSSscrubbeR constructor function |
encode_genomic-function | One Hot Encode Genomic Sequences |
encode_shape-function | Retrieve DNA Shape |
encode_signal-function | Encode Surrounding Signal |
encode_soft-function | One Hot Encode Soft-clipped Bases |
encode_status-function | Encode TSS Status |
expand_ranges | Expand Ranges |
export_bedgrpahs-function | Export TSS Bedgraphs |
export_encoded-function | Export Encoded |
export_raw-function | Export Raw |
export_report-function | Export Report |
get_sequences-function | Retrieve Sequences |
get_signal-function | Get Surrounding Signal |
get_softclip-function | Get Softclipped Bases |
mark_status | Mark Status |
one_hot_encode-function | One Hot Encode a Sequence (Deprecated) |
split_data | Train/Test Split |
tss_annotate-function | Annotate the TSSs |
tss_evaluate-function | Evaluate TSS Model |
tss_model | Build TSS Model |
tss_predict-function | Predict TSS artifact probabilities |
tss_train-function | Train TSS Model |
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