Man pages for rptashkin/facets2n
Cellular Faction and Copy Numbers from Tumor Sequencing
| emcncf | EM estimate of copy number and cellular fraction of segment... |
| emcncf2 | EM estimate of copy number and cellular fraction with clonal... |
| facets2n-internal | facets functions |
| facets2n-package | package documentation |
| FindBestNormalParameters | FindBestNormalParameters takes takes a facets2n generated... |
| fitcncf | Copy number and cellular fraction of segment clusters |
| logRlogORspider | logRlogRsplide plot generation from cncf input |
| MakeLoessObject | MakeLoessObject takes a pipleup file generated by snp-pileup... |
| plotSample | Plot the data and results for a single sample |
| preProcSample | Pre-process a sample |
| PreProcSnpPileup | PreProcSnpPileup takes a snp-pileup generated pileup file and... |
| procSample | Process a sample |
| procXSnps | Takes a snp-pileup file and determines sex of sample and any... |
| readSnpMatrix | Read in the snp-pileup generated SNP read count matrix file |
