fitcncf: Copy number and cellular fraction of segment clusters
In rptashkin/facets2n: Cellular Faction and Copy Numbers from Tumor Sequencing
fitcncf R Documentation
Copy number and cellular fraction of segment clusters
Description
Copy number and cellular fraction of segment clusters
Usage
fitcncf(out, dipLogR = 0, nX = 23)
Arguments
out
the out element from procSample fit
dipLogR
log-ratio level corresponding to diploid copy number
nX
integer value of ChrX; humans 23 (default); mouse 20.
Details
This function is called internally by procSample. It can be used to refit the model at a different dipLogR value.
Value
A data frame with the same columns as out and three additional columns which give the cellular fraction (cf), total copy number (tcn) and lower copy number (lcn) for each segment. If a cluster does not have sufficient heterozygotes the lcn value will be NA.
rptashkin/facets2n documentation built on May 11, 2022, 1:34 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| fitcncf | R Documentation |
Copy number and cellular fraction of segment clusters
Description
Copy number and cellular fraction of segment clusters
Usage
fitcncf(out, dipLogR = 0, nX = 23)
Arguments
out |
the out element from procSample fit |
dipLogR |
log-ratio level corresponding to diploid copy number |
nX |
integer value of ChrX; humans 23 (default); mouse 20. |
Details
This function is called internally by procSample. It can be used to refit the model at a different dipLogR value.
Value
A data frame with the same columns as out and three additional columns which give the cellular fraction (cf), total copy number (tcn) and lower copy number (lcn) for each segment. If a cluster does not have sufficient heterozygotes the lcn value will be NA.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.