genoprob_to_alleleprob: Convert genotype probabilities to allele probabilities
In rqtl/qtl2geno: Treatment of Marker Genotypes for QTL Experiments

Description Usage Arguments Value Examples

Reduce genotype probabilities (as calculated by calc_genoprob()) to allele probabilities.

1	genoprob_to_alleleprob(probs, quiet = TRUE, cores = 1)

`probs`	Genotype probabilities, as calculated from `calc_genoprob()`.
`quiet`	IF `FALSE`, print progress messages.
`cores`	Number of CPU cores to use, for parallel calculations. (If `0`, use `parallel::detectCores()`.) Alternatively, this can be links to a set of cluster sockets, as produced by `parallel::makeCluster()`.

The probs input with probabilities collapsed to alleles rather than genotypes.

iron <- read_cross2(system.file("extdata", "iron.zip", package="qtl2geno"))
gmap_w_pmar <- insert_pseudomarkers(iron, step=1)
probs <- calc_genoprob(iron, gmap_w_pmar, error_prob=0.002)
allele_probs <- genoprob_to_alleleprob(probs)