Oryzabase-class: An S4 class to represent the third database Gene.

In rricepackage/rRice: rRice package to make easier the study of the genomic of rice

Description

This gene is specific to the database 3 that is the database "Oryzabase". So it contains all the informations we can have about one gene with the "Oryzabase" database.

Slots

id

The id of the gene. Many genes can have the same id because there are the same in spite of the different attributes they have.

genesIDs

the list of diferent ids it have we will use with the databases.

locus

The locus the gene belongs.

others

The others attributes the user want to add or delete.

traitGeneId

id

cgsnlGeneSymbol

id

GeneSymbolSynonim

id

cgsnlSymbolSynonim

id

GeneNameSynonim

id

proteinName

id

allele

id

chromosomeNumber

id

explanation

id

traitClass

id

rapID

id

grameneId

id

arm

id

locate

id

geneOntology

id

traitOntology

id

plantOntology

id

Examples

gene <- new("Oryzabase")

rricepackage/rRice documentation built on May 24, 2019, 2:53 p.m.