| bootstrap_error | Bootstrap the standard deviation of the mean |
| check_pephylo | View PEPHYLO input files |
| combine_pulsr_results | Combine output files |
| dematlabilize_data | Export Matlab output |
| estimate_error | Estimate error on the means |
| estimate_spext | Esimate speciation and extinction |
| fit_pulsr | Fit repeated pulsR |
| is_matching_names | View PEPHYLO input files |
| make_mean_pephylo | Write PEPHYLO input mean traits |
| make_prior_pephylo | Anagenetic and cladogenetic rate priors for PEPHYLO |
| make_spext_pephylo | PEPHYLO speciation and extinction rate priors |
| make_spname_pephylo | Write species names for PEPHYLO |
| make_std_pephylo | Write PEPHYLO standard deviation input |
| pca_perpatch | Project bird species in patch PC space |
| pca_wholebird | Project bird species in PC space |
| project_individuals | Project individuals into PC space |
| rearrange_by_patch | Rearrange with patches in columns |
| rearrange_indiv_by_patch | Rearrange individuals with patches in columns |
| remove_bad_patches | Remove patches with NAs |
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