estimate_spext: Esimate speciation and extinction
In rscherrer/bop:
Description
Usage
Arguments
Value
Note
Author(s)
View source: R/estimate_spext.R
Description
This function fits Nee's likelihood function to one or more trees and returns the estimated speciation and extinction rates by maximum likelihood, as well as the average age of all trees. If several trees are input, the average of those is returned.
Usage
1
estimate_spext(treepath)
Arguments
treepath
A path to where the tree file is. The tree file should be named "Tress.txt" and be in Newick format. It may contain several trees.
Value
A vector with a speciation and an extinction rate.
Note
ape is a dependency.
Author(s)
Raphael Scherrer
rscherrer/bop documentation built on May 22, 2019, 3:54 p.m.
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Description Usage Arguments Value Note Author(s)
View source: R/estimate_spext.R
Description
This function fits Nee's likelihood function to one or more trees and returns the estimated speciation and extinction rates by maximum likelihood, as well as the average age of all trees. If several trees are input, the average of those is returned.
Usage
1 | estimate_spext(treepath)
|
Arguments
treepath |
A path to where the tree file is. The tree file should be named "Tress.txt" and be in Newick format. It may contain several trees. |
Value
A vector with a speciation and an extinction rate.
Note
ape is a dependency.
Author(s)
Raphael Scherrer
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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