pca_perpatch: Project bird species in patch PC space
In rscherrer/bop:

Description Usage Arguments Value Author(s)

This function performs a Principal Component Analysis from quantum catches measured on different patches on the plumage. Each bird is represented by several patches, so several points.

1	pca_perpatch(inpath, varNames = c("VS.v", "S.v", "M.v", "L.v"))

`inpath`	A string. The path to the folder where to find the input data file. Note: the input data file is named "specs.csv".
`varNames`	A vector of strings. The names of the dependent variables in the input data frame.

A list of two elements. The first is the output of prcomp performed on the dependent variables, where each bird has coordinates. The second element a table with metadata identifying each observation in the PCA.

Raphael Scherrer

rscherrer/bop documentation built on May 22, 2019, 3:54 p.m.