LinfK_scatterhist: Link/K scatterplot of bootstrapping results

In rschwamborn/fishboot: Bootstrap-based methods for the study of fish stocks and aquatic populations

Description

Link/K scatterplot of bootstrapping results

Usage

LinfK_scatterhist(res, Linf.breaks = "Sturges", K.breaks = "Sturges",
  gridsize = rep(151, 2), H = NULL, shading = TRUE,
  shading.cols = colorRampPalette(c("white", blues9))(50),
  dens.contour = TRUE, probs = c(25, 50, 75, 95),
  phi.contour = FALSE, phi.levels = NULL, phi.contour.col = 8,
  phi.contour.lty = 2, phi.contour.lwd = 1,
  phi.contour.labcex = 0.75, pt.pch = 16, pt.col = adjustcolor(1,
  0.25), pt.cex = 0.5, pt.bg = 4,
  xlab = expression(italic("L")[infinity]),
  ylab = expression(italic("K")), xlim = NULL, ylim = NULL)

Arguments

res	list of class 'lfqBoot'
Linf.breaks	vector. Breaks for Linf histogram.
K.breaks	vector. Breaks for K histogram.
gridsize	vector. 2 values for defining the resolution of the grid
H	object from Hpi (Default: 'H = ks::Hpi(res[,c("Linf", "K")])')
shading	logical. Should 2d field of density estimates be colored with colors specified by 'shading.cols' argument (Default: 'shading = TRUE').
shading.cols	vector. Colors for background shading of 2d field of density estimates (Default: 'shading.cols = colorRampPalette(c("white", blues9))(50)').
dens.contour	logical. Should contour lines be added (Default: 'dens.contour = TRUE')
probs	vector. Density probability cutoffs to be plotted by contours when 'dens.contour = TRUE' (Default: 'probs = c(25,50,75,95)').
phi.contour	logical. Should phi prime isolines be displayed (Default: 'phi.contour = FALSE')
phi.levels	vector. Phi prime values to display when 'phi.contour = TRUE' (Default: 'phi.levels = NULL'). When not defined ('phi.levels = NULL'), the default levels are chosen automatically by the contour function.
phi.contour.col	vector. Color to use for phi prime contours. Passed to contour.
phi.contour.lty	vector. Line type to use for phi prime contours. Passed to contour.
phi.contour.lwd	vector. Line width to use for phi prime contours. Passed to contour.
phi.contour.labcex	vector. Labels for the contour lines. Passed to contour.
pt.pch	pch value to use for resampling points
pt.col	color to use for resampling points
pt.cex	size value to use for resampling points
pt.bg	background color to use for resampling points
xlab	label for x-axis
ylab	lavel for y axis
xlim	limits for x-axis
ylim	limits for y-axis

Value

plot

Examples

data(alba_boot)
LinfK_scatterhist(alba_boot)

rschwamborn/fishboot documentation built on July 27, 2019, 12:36 a.m.