create_full_CS_stt: Unsampled CS full STT

In rsetienne/DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Unsampled CS full STT

Description

Unsampled CS full STT

Usage

create_full_CS_stt(stt_list, stac_vec, total_time, trait_pars = NULL)

Arguments

stt_list	List of full stt tables as returned by DAISIE_sim_core functions
stac_vec	Vector with status of species on island.
total_time	Numeric double with total time of simulation.
trait_pars	A named list containing diversification rates considering two trait states created by create_trait_pars: [1]:A numeric with the per capita transition rate with state1 [2]:A numeric with the per capita immigration rate with state2 [3]:A numeric with the per capita extinction rate with state2 [4]:A numeric with the per capita anagenesis rate with state2 [5]:A numeric with the per capita cladogenesis rate with state2 [6]:A numeric with the per capita transition rate with state2 [7]:A numeric with the number of species with trait state 2 on mainland

Value

1 complete, unsampled STT table from all clades in an island of a CS model as generated by DAISIE_sim_core functions.

Author(s)

Pedro Neves, Joshua Lambert, Shu Xie, Giovanni Laudanno

rsetienne/DAISIE documentation built on Oct. 25, 2023, 4:32 a.m.