multipar: Create a matrix with output for multiple parameter...

In rucky151/shapp1: Scenario Analysis for Seed Health

Description

This function creates a matrix with output for multiple parameter combinations across nseasons

Usage

multipar(pHSinit = c(0.2, 0.5, 0.8), Kx = 100, betax = c(0.02, 0.04),
  wxtnormm = c(0.3, 0.7), wxtnormsd = c(0.3, 0.1), hx = 1,
  mxtnormm = 1, mxtnormsd = 0.1, axtnormm = c(1, 0.5),
  axtnormsd = c(0.3, 0.1), rx = c(0.1, 0.3), zxtnormm = c(1, 0.5),
  zxtnormsd = c(0.3, 0.1), gx = 4, cx = 0.9, phix = c(0, 0.5),
  nseasons = 10, nsim = 1, HPcut = 0.5, pHScut = 0.5, maY = 100,
  miY = 0, thetax = c(-0.5, 0, 0.5), Ex = 0.02)

Arguments

pHSinit	the initial proportion of healthy seed, numeric or numeric vector.
Kx	the total number of plants, positive interger, numeric or numeric vector.
betax	the maximum seasonal transmission rate, numeric or numeric vector.
wxtnormm	the environmental effect on transmission rate (mean of underlying normal distribution prior to truncation), numeric or numeric vector.
wxtnormsd	the environmental effect on transmission rate (standard deviation of underlying normal distribution prior to truncation), numeric or numeric vector.
hx	the host effect on transmission rate, numeric or numeric vector.
mxtnormm	the vector management effect on transmission rate (mean of underlying normal distribution prior to truncation), numeric or numeric vector.
mxtnormsd	the vector management effect on transmission rate (standard deviation of underlying normal distribution prior to truncation), numeric or numeric vector.
axtnormm	the roguing effect in terms of decreased DP (mean of underlying normal distribution prior to truncation), numeric or numeric vector.
axtnormsd	the roguing effect in terms of decreased DP (standard deviation of underlying normal distribution prior to truncation), numeric or numeric vector.
rx	the reversion rate, numeric or numeric vector.
zxtnormm	the proportional selection against diseased plants (mean of underlying normal distribution prior to truncation), numeric or numeric vector.
zxtnormsd	the proportional selection against diseased plants (standard deviation of underlying normal distribution prior to truncation), numeric or numeric vector.
gx	the seed production rate in healthy plants, numeric or numeric vector.
cx	the proportional seed production rate in diseased plants, numeric or numeric vector.
phix	the proportion clean seed purchased, numeric or numeric vector.
nseasons	the number of seasons, numeric or numeric vector.
nsim	vector of number of simulations
HPcut	the proportion healthy plant number cutoff, numeric or numeric vector.
pHScut	the proportion healthy seed cutoff, numeric or numeric vector.
maY	the maximum attainable yield, end of season, in the absence of disease, numeric or numeric vector.
miY	the minimum yield when all plants are diseased (useable yield despite disease), numeric or numeric vector.
thetax	the rate of decline of Yld with increasing disease incidence, numeric or numeric vector.
Ex	the amount of external inoculum around field, numeric or numeric vector.

Details

The truncated random normal variables were generated by altruncnorm. Refer onesim, and multisim for relevant information. dde

Examples

multipar() # to be added

rucky151/shapp1 documentation built on Oct. 31, 2020, 2:30 p.m.