Man pages for ruqianl/comapr
Crossover analysis and genetic map construction
| bootstrapDist | bootstrapDist |
| calGeneticDist | calGeneticDist |
| coCount | RangedSummarizedExperiment object containing the crossover... |
| comapr | 'comapr' package |
| combineHapState | combineHapState |
| correctGT | correctGT |
| countBinState | countBinState |
| countCOs | countCOs |
| countGT | countGT |
| dot-change_missing | change SNPs with genotype 'Fail' to 'NA' |
| dot-filterCOsExtra | Filter out doublet cells and uninformative SNPs |
| dot-label_gt | 'label_gt' for changing genotypes in alleles format to labels |
| fill_fail | Infer the genotype of failed SNPs If we have a 'Fail' in the... |
| filterGT | filterGT |
| findDupSamples | findDupSamples |
| getAFTracks | getAFTracks |
| getCellAFTrack | getCellAFTrack Generates the DataTracks for plotting AF and... |
| getCellCORange | getCellCORange |
| getCellDPTrack | getCellDPTrack Generates the DataTrack for plotting DP of a... |
| getDistortedMarkers | getDistortedMarkers |
| getMeanDPTrack | getMeanDPTrack |
| getSNPDensityTrack | getSNPDensityTrack |
| parents_geno | Parents' genotype for F1 samples in 'snp_geno' |
| perCellChrQC | perCellChrQC |
| permuteDist | permuteDist |
| perSegChrQC | perSegChrQC |
| plotCount | plotCount |
| plotGeneticDist | plotGeneticDist |
| plotGTFreq | plotGTFreq |
| plotWholeGenome | Plot cumulative genetic distances across the genome |
| readColMM | readColMM |
| readHapState | readHapState |
| snp_geno | Markers by genotype results for a group of samples |
| snp_geno_gr | Markers by genotype results for a group of samples |
| twoSamples | RangedSummarizedExperiment object containing the Viterbi... |
