plotGeneticDist: plotGeneticDist

In ruqianl/comapr: Crossover analysis and genetic map construction

plotGeneticDist

Description

Plotting the calculated genetic distanced for each bin or marker interval supplied by the GRanges object

Usage

plotGeneticDist(gr, bin = TRUE, chr = NULL, cumulative = FALSE)

Arguments

gr	GRanges object with genetic distances calculated for marker intervals
bin	TRUE or FALSE, indicating whether the supplied GRange objecct is for binned interval
chr	the specific chrs selected to plot
cumulative	TRUE or FALSE, indicating whether it plots the bin-wise genetic distances or the cumulative distances

Value

ggplot2 plot

Author(s)

Ruqian Lyu

Examples

data(coCount)
dist_se <- calGeneticDist(coCount)
plotGeneticDist(SummarizedExperiment::rowRanges(dist_se))

ruqianl/comapr documentation built on Oct. 27, 2023, 5:12 a.m.