fill_fail: Infer the genotype of failed SNPs If we have a 'Fail' in the...
In ruqianl/comapr: Crossover analysis and genetic map construction
View source: R/reformat-geno-mt.R
fill_fail R Documentation
Infer the genotype of failed SNPs
If we have a Fail in the genotype data and the Fail in a block
of either Home_alt, or Het, we fill in the Fails using values of the
ones adjacent to it, otherwise they remain as "Fail" to indicate missing
values.
Description
Infer the genotype of failed SNPs
If we have a Fail in the genotype data and the Fail in a block
of either Home_alt, or Het, we fill in the Fails using values of the
ones adjacent to it, otherwise they remain as "Fail" to indicate missing
values.
Usage
fill_fail(s_gt, fail = "Fail", chr = NULL)
Arguments
s_gt,
a column of labelled genotypes
fail,
the string that is used for encoding failed genotype results,
default to Fail
chr,
the factor vector indicating which chromosomes the markers are
on, default to NULL which means the input markers are all on the same
chromosome.
Value
a vector of genotypes with Failed genotype imputed or changed to 'NA' if not
imputable
Author(s)
Ruqian Lyu
ruqianl/comapr documentation built on Oct. 27, 2023, 5:12 a.m.
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View source: R/reformat-geno-mt.R
| fill_fail | R Documentation |
Infer the genotype of failed SNPs
If we have a Fail in the genotype data and the Fail in a block
of either Home_alt, or Het, we fill in the Fails using values of the
ones adjacent to it, otherwise they remain as "Fail" to indicate missing
values.
Description
Infer the genotype of failed SNPs
If we have a Fail in the genotype data and the Fail in a block
of either Home_alt, or Het, we fill in the Fails using values of the
ones adjacent to it, otherwise they remain as "Fail" to indicate missing
values.
Usage
fill_fail(s_gt, fail = "Fail", chr = NULL)
Arguments
s_gt, |
a column of labelled genotypes |
fail, |
the string that is used for encoding failed genotype results,
default to |
chr, |
the factor vector indicating which chromosomes the markers are
on, default to |
Value
a vector of genotypes with Failed genotype imputed or changed to 'NA' if not imputable
Author(s)
Ruqian Lyu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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