Description Usage Arguments Value
Perform folding inference using sliding windows and RNAfold
from the
ViennaRNA Package 2.0 by Lorenz et al. doi:10.1186/1748-7188-6-26.
1 2 3 4 5 6 7 8 |
filename |
The name of the file which the sequences in FASTA format are to be read from. |
winsize |
Window size of the sliding windows. |
stepsize |
Step size of the sliding windows. |
same_num_samples |
If TRUE, fold will perform additional foldings at the beginning and end of the sequence. This allows the beginning and end of the sequence to have the same amount of samples/windows go through it. This is specially important for calculating Shannon's entropy. |
rnafold_params |
Parameters used by |
verbose |
If TRUE, fold will print information of performance. |
List of RNAfold
results for each sliding window.
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