plot_structure_map: Plot Structure Map from Sliding Windows

In ruthkr/rnafolding: What the Package Does (One Line, Title Case)

Description

Plot structure map from sliding windows folding results.

Usage

plot_structure_map(
  windowed_folds,
  utr5_lims = NULL,
  utr3_lims = NULL,
  num_facets = 1,
  freq_cutoff = 0.5,
  prob_cutoff = 0.9,
  plot_list = c("entropy", "bpp", "orf", "utr")
)

Arguments

windowed_folds	List of RNAfold results for each sliding window. Result of fold() function.
utr5_lims	Vector of lower and upper limits of UTR 5'.
utr3_lims	Vector of lower and upper limits of UTR 3'.
num_facets	Number of facets or splits.
freq_cutoff	Frequency cut-off.
prob_cutoff	Probability cut-off.
plot_list	List of plots to display. Options are c("entropy", "bpp", "orf", "utr"), the order of which will be respected.

Value

A patchwork object.

ruthkr/rnafolding documentation built on Jan. 9, 2021, 3:22 p.m.