| .get_cache |
Source code
|
| .onLoad |
Source code
|
| .onUnload |
Source code
|
| AUC |
Source code
|
| Average_exp |
Man page
|
| Average_exp,SignExp-method |
Man page
|
| Average_sign |
Man page
|
| Average_sign,SignExp-method |
Man page
|
| BICboxplot |
Man page
Source code
|
| Comp_labels |
Source code
|
| DiffExp |
Man page
|
| DiffExp,SignExp,character-method |
Man page
|
| EstimateParameters |
Source code
|
| ExposureBarplot |
Man page
|
| ExposureBarplot,SignExp-method |
Man page
|
| ExposureBoxplot |
Man page
|
| ExposureBoxplot,SignExp-method |
Man page
|
| ExposureClassify |
Man page
|
| ExposureClassify,ANY,character-method |
Man page
|
| ExposureClassify,SignExp,character-method |
Man page
|
| ExposureClassifyCV |
Man page
|
| ExposureClassifyCV,ANY,character-method |
Man page
|
| ExposureClassifyCV,SignExp,character-method |
Man page
|
| ExposureCorrelation |
Man page
|
| ExposureCorrelation,SignExp,numeric-method |
Man page
|
| ExposureCorrelation,matrix,numeric-method |
Man page
|
| ExposureGLM |
Man page
|
| ExposureGLM,SignExp,numeric-method |
Man page
|
| ExposureGLM,matrix,numeric-method |
Man page
|
| ExposureHeat |
Man page
|
| ExposureHeat,SignExp-method |
Man page
|
| ExposureSurvModel |
Man page
|
| ExposureSurvModel,SignExp,Surv-method |
Man page
|
| ExposureSurvModel,SignExp,character-method |
Man page
|
| ExposureSurvModel,SignExp-method |
Man page
|
| ExposureSurvModel,matrix,Surv-method |
Man page
|
| ExposureSurvModel,matrix,character-method |
Man page
|
| ExposureSurvModel,matrix-method |
Man page
|
| ExposureSurvival |
Man page
|
| ExposureSurvival,SignExp,Surv-method |
Man page
|
| ExposureSurvival,SignExp,character-method |
Man page
|
| ExposureSurvival,SignExp-method |
Man page
|
| ExposureSurvival,matrix,Surv-method |
Man page
|
| ExposureSurvival,matrix,character-method |
Man page
|
| ExposureSurvival,matrix-method |
Man page
|
| FuzzyClustExp |
Man page
|
| FuzzyClustExp,SignExp,numeric-method |
Man page
|
| FuzzyClustExp,SignExp-method |
Man page
|
| FuzzyClusterCpp |
Source code
|
| GibbsSamplerCpp |
Source code
|
| HClustExp |
Man page
|
| HClustExp,SignExp,numeric-method |
Man page
|
| HClustExp,SignExp-method |
Man page
|
| Logistic.reg |
Source code
|
| Median_exp |
Man page
|
| Median_exp,SignExp-method |
Man page
|
| Median_sign |
Man page
|
| Median_sign,SignExp-method |
Man page
|
| Mymelt |
Source code
|
| Normalize |
Man page
|
| Normalize,SignExp-method |
Man page
|
| Optimal_sigs |
Source code
|
| Paths |
Man page
|
| Paths,SignExp-method |
Man page
|
| Reorder_mutations |
Man page
|
| Reorder_mutations,SignExp,numeric-method |
Man page
|
| Reorder_samples |
Man page
|
| Reorder_samples,SignExp,numeric-method |
Man page
|
| Reorder_signatures |
Man page
|
| Reorder_signatures,SignExp,numeric-method |
Man page
|
| SignExp |
Man page
|
| SignExp-class |
Man page
|
| SignExpConstructor |
Source code
|
| SignHeat |
Man page
|
| SignHeat,SignExp-method |
Man page
|
| SignPlot |
Man page
|
| SignPlot,SignExp-method |
Man page
|
| aboutpage |
Source code
|
| checkSeqLevels |
Source code
|
| clustering |
Source code
|
| clustering_UI |
Source code
|
| cosmic_data |
Man page
|
| covariate |
Source code
|
| covariate_UI |
Source code
|
| denovo |
Source code
|
| denovo_UI |
Source code
|
| docspage |
Source code
|
| download_clinical_file |
Source code
|
| download_data_file |
Source code
|
| download_opp_file |
Source code
|
| eBayesNMF |
Source code
|
| explorepage |
Source code
|
| fitting |
Source code
|
| fitting_UI |
Source code
|
| genCountMatrixFromMAF |
Man page
Source code
|
| genCountMatrixFromVcf |
Man page
Source code
|
| genOpportunityFromGenome |
Man page
Source code
|
| getFirstGenoAltIndex |
Source code
|
| imgLinkBox |
Source code
|
| isBadGeno |
Source code
|
| isGenoIndexRef |
Source code
|
| messageBox |
Source code
|
| optionsBox |
Source code
|
| plotBox |
Source code
|
| read.snv.context |
Source code
|
| revcomp |
Source code
|
| sectionBox |
Source code
|
| setMutations |
Man page
|
| setMutations,SignExp-method |
Man page
|
| setSamples |
Man page
|
| setSamples,SignExp-method |
Man page
|
| signeR |
Man page
Source code
|
| signeR-package |
Man page
|
| signeRFlow |
Man page
Source code
|
| tableBox |
Source code
Source code
|
| tcga_similarities |
Man page
|
| tcga_tumors |
Man page
|
| tcgaexplorer |
Source code
|
| tcgaexplorer_UI |
Source code
|
| textBox |
Source code
|
| titleBox |
Source code
|
| validate_clinical |
Source code
|
| validate_cnv |
Source code
|
| validate_knownsig |
Source code
|
| validate_maf |
Source code
|
| validate_samples |
Source code
|
