Files in rvalieris/signeR
Empirical Bayesian approach to mutational signature discovery

.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/BICboxplot.R R/Comp_labels.R R/Definition_SignExp_object.R R/EstimateParameters.R R/Optimal_sigs.R R/RcppExports.R R/SignExp_learning.R R/SignExp_plots.R R/SignExp_tests.R R/cpp_eBayesNMF.R R/flow_aboutpage.R R/flow_app.R R/flow_clusteringmodule.R R/flow_covariatemodule.R R/flow_denovomodule.R R/flow_documentation.R R/flow_explorepage.R R/flow_fittingmodule.R R/flow_format.R R/flow_tcgaexplorermodule.R R/flow_validate.R R/genMatrix.R R/read.snv.context.R R/signeR.R
R/sysdata.rda
R/zzz.R README.md
data/cosmic_data.rda
data/tcga_similarities.rda
data/tcga_tumors.rda
inst/CITATION
inst/extdata/21_breast_cancers.mutations.txt
inst/extdata/21_breast_cancers.opportunity.txt
inst/extdata/Cosmic_signatures_BRC.txt
inst/extdata/clinical-test-signerflow.tsv
inst/extdata/example.bed
inst/extdata/example.maf
inst/extdata/example.vcf
inst/extdata/genome_help.md inst/extdata/iterations.md inst/extdata/knownsigs_help.md inst/extdata/metadata_help.md inst/extdata/opp_help.md inst/extdata/snv_help.md inst/extdata/tcga_analysis.md inst/www/about.md
inst/www/assets/boxplot.ico
inst/www/assets/correlation.ico
inst/www/assets/cox.ico
inst/www/assets/km.ico
inst/www/assets/linear-regression.ico
inst/www/assets/sample-classification.ico
inst/www/assets/signer.png
inst/www/assets/signeranalysis.jpg
inst/www/assets/tcgaexplorer.jpg
inst/www/bootstrapTable.min.css
inst/www/custom.css
inst/www/footer.css
inst/www/footer.html
man/Diffexp.Rd man/ExposureClassify.Rd man/ExposureClassifyCV.Rd man/ExposureCorrelation.Rd man/ExposureFuzzyClustering.Rd man/ExposureGLM.Rd man/ExposureHierarchicalClustering.Rd man/ExposureSurvModel.Rd man/ExposureSurvival.Rd man/cosmic_data.Rd man/genMatrix.Rd man/methods.Rd man/plots.Rd man/signeR-package.Rd man/signeR.Rd man/signeRFlow.Rd man/signexp-class.Rd man/tcga_similarities.Rd man/tcga_tumors.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/fuzzy.cpp
src/gibbs_2.cpp
src/signeR_init.c
vignettes/Model_selection_BICs.png
vignettes/flow_clinical.png
vignettes/flow_clinical_summary.png
vignettes/flow_clustering_dist.png
vignettes/flow_clustering_method.png
vignettes/flow_cor.png
vignettes/flow_cox.png
vignettes/flow_de.png
vignettes/flow_de_novo.png
vignettes/flow_fitting.png
vignettes/flow_fuzzy.png
vignettes/flow_lr.png
vignettes/flow_opp_upload.png
vignettes/flow_overview.png
vignettes/flow_previous_sig.png
vignettes/flow_sc.png
vignettes/flow_snv_upload.png
vignettes/flow_sv.png
vignettes/flow_tcga_data_summary.png
vignettes/flow_tcga_explorer.png
vignettes/flow_tcga_filter.png
vignettes/flow_tcga_filter_covariate.png
vignettes/signeR-vignette.Rhtml
vignettes/signeRFlow.Rmd
rvalieris/signeR documentation built on April 20, 2024, 2:08 p.m.